Click here to switch to the map view.

The map label for this gene is yncB [H]

Identifier: 93005840

GI number: 93005840

Start: 1210844

End: 1211893

Strand: Reverse

Name: yncB [H]

Synonym: Pcryo_1012

Alternate gene names: 93005840

Gene position: 1211893-1210844 (Counterclockwise)

Preceding gene: 93005841

Following gene: 93005839

Centisome position: 39.61

GC content: 45.43

Gene sequence:

>1050_bases
ATGAGCTTTAACGAACAACAAAATCCACAACAAAATCGTCAAATCAAACTTGCCAGCCGCCCACATGGCGCACCAACTGC
CGATAATTTTGAATTGGCTACTGGCGATATTCCAAAACCCAATCAAAGCGAAATGCTATTACGCACCGTATATTTATCGC
TTGACCCTTATATGCGCGGACGTATGAGTGATGCCGCAAGCTACGCCGACCCATTAGAAATTGGCGATGTCATGCTAGGC
GGAACGGTTGCCCAAGTCGTCGAGTCTAATATCGATACATTTGCAGTCGGTGATTTGGTAGTATCGAACTCGGGCTGGCA
GGACTATAGCGTCAGCGATGGCGAAGGCGTCCTAAAACTCGATAAAAACATGGCAAACCCTTCTTATGGCTTGGGTGTGC
TTGGTATGCCCGGCTTCACAGGTTACATGGGTTTGACTGATATCGGTAAACCAAAAAAAGGCGAGACCTTAGTTGTCGCG
GCGGCAACGGGTCCTGTTGGTGCAACTGTTGGACAAGTCGGTAATCAATTAGGCTTACGTACTGTTGGCGTCGCTGGCGG
TGCTGAGAAGTGTGCTTACGCAGTTGAAGAACTAGGCTTTGATGTTTGTCTTGATCATAAAGCCGATGACTTTGCTGAAC
AACTAGCAATCGCTTGCCCAAATGGTATCGACATTTATTACGAAAACGTCGGTGGTAAAGTCTTTGATGGCGTATTGCCA
CTATTAAACGCCCACGCACGTATTCCAGTATGTGGCTTGGTATCACAATATAACGCCACTGAATTGCCGGACGGTAAAGA
CCGTTTGGGTGTCCTGATGGGTAATATTTTAAGCAAACGTCTAACCATAAAAGGCTTTATTATCTTTGAAGAATACGGCG
ATCATTTCCCAGAATTCTTAGCTACGATGAGCAAATGGCTTGAATCAGGTGATGTTAAAACCAAAGAGCATCAAGTCGAT
GGTTTAGCCCAAGCACCACAAGCTTTCTTTGACATGCTTGATGGCAAAAACTTTGGTAAGACAGTGATTAAAGTGGCTGA
CGTTCAATAA

Upstream 100 bases:

>100_bases
TTATCTATAGTTATATTGTCGTTATAGAAACCACTAGCCTGTCACTTCAGAGTGGCGGGTAACTTTAAAATCAAAAATAA
ATAAAATAAGGCGCTTTATC

Downstream 100 bases:

>100_bases
CGGATAGCTAACATAAAAAATCATGAAAATAACCAGTTAACAACATAACTTGTTAAGACAGCTACTGAAAGTCATTCTTA
AAAGATGAATACTGTCAGCA

Product: zinc-binding alcohol dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 348

Protein sequence:

>349_residues
MSFNEQQNPQQNRQIKLASRPHGAPTADNFELATGDIPKPNQSEMLLRTVYLSLDPYMRGRMSDAASYADPLEIGDVMLG
GTVAQVVESNIDTFAVGDLVVSNSGWQDYSVSDGEGVLKLDKNMANPSYGLGVLGMPGFTGYMGLTDIGKPKKGETLVVA
AATGPVGATVGQVGNQLGLRTVGVAGGAEKCAYAVEELGFDVCLDHKADDFAEQLAIACPNGIDIYYENVGGKVFDGVLP
LLNAHARIPVCGLVSQYNATELPDGKDRLGVLMGNILSKRLTIKGFIIFEEYGDHFPEFLATMSKWLESGDVKTKEHQVD
GLAQAPQAFFDMLDGKNFGKTVIKVADVQ

Sequences:

>Translated_349_residues
MSFNEQQNPQQNRQIKLASRPHGAPTADNFELATGDIPKPNQSEMLLRTVYLSLDPYMRGRMSDAASYADPLEIGDVMLG
GTVAQVVESNIDTFAVGDLVVSNSGWQDYSVSDGEGVLKLDKNMANPSYGLGVLGMPGFTGYMGLTDIGKPKKGETLVVA
AATGPVGATVGQVGNQLGLRTVGVAGGAEKCAYAVEELGFDVCLDHKADDFAEQLAIACPNGIDIYYENVGGKVFDGVLP
LLNAHARIPVCGLVSQYNATELPDGKDRLGVLMGNILSKRLTIKGFIIFEEYGDHFPEFLATMSKWLESGDVKTKEHQVD
GLAQAPQAFFDMLDGKNFGKTVIKVADVQ
>Mature_348_residues
SFNEQQNPQQNRQIKLASRPHGAPTADNFELATGDIPKPNQSEMLLRTVYLSLDPYMRGRMSDAASYADPLEIGDVMLGG
TVAQVVESNIDTFAVGDLVVSNSGWQDYSVSDGEGVLKLDKNMANPSYGLGVLGMPGFTGYMGLTDIGKPKKGETLVVAA
ATGPVGATVGQVGNQLGLRTVGVAGGAEKCAYAVEELGFDVCLDHKADDFAEQLAIACPNGIDIYYENVGGKVFDGVLPL
LNAHARIPVCGLVSQYNATELPDGKDRLGVLMGNILSKRLTIKGFIIFEEYGDHFPEFLATMSKWLESGDVKTKEHQVDG
LAQAPQAFFDMLDGKNFGKTVIKVADVQ

Specific function: Unknown

COG id: COG2130

COG function: function code R; Putative NADP-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NADP-dependent oxidoreductase L4BD family [H]

Homologues:

Organism=Homo sapiens, GI226059159, Length=338, Percent_Identity=35.7988165680473, Blast_Score=213, Evalue=3e-55,
Organism=Homo sapiens, GI226059133, Length=338, Percent_Identity=35.7988165680473, Blast_Score=213, Evalue=3e-55,
Organism=Homo sapiens, GI226246682, Length=346, Percent_Identity=34.971098265896, Blast_Score=210, Evalue=1e-54,
Organism=Homo sapiens, GI226246680, Length=346, Percent_Identity=34.971098265896, Blast_Score=210, Evalue=1e-54,
Organism=Homo sapiens, GI22748929, Length=346, Percent_Identity=34.971098265896, Blast_Score=210, Evalue=1e-54,
Organism=Homo sapiens, GI226056130, Length=289, Percent_Identity=36.3321799307958, Blast_Score=181, Evalue=1e-45,
Organism=Homo sapiens, GI28557745, Length=328, Percent_Identity=26.5243902439024, Blast_Score=87, Evalue=3e-17,
Organism=Escherichia coli, GI226510941, Length=340, Percent_Identity=64.4117647058824, Blast_Score=453, Evalue=1e-129,
Organism=Caenorhabditis elegans, GI133901710, Length=365, Percent_Identity=33.4246575342466, Blast_Score=179, Evalue=2e-45,
Organism=Caenorhabditis elegans, GI133901712, Length=365, Percent_Identity=33.4246575342466, Blast_Score=178, Evalue=3e-45,
Organism=Saccharomyces cerevisiae, GI6323504, Length=347, Percent_Identity=27.3775216138329, Blast_Score=103, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013149
- InterPro:   IPR002085
- InterPro:   IPR011032
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00107 ADH_zinc_N [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 37346; Mature: 37215

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFNEQQNPQQNRQIKLASRPHGAPTADNFELATGDIPKPNQSEMLLRTVYLSLDPYMRG
CCCCCCCCCCCCCEEEEECCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCHHHHC
RMSDAASYADPLEIGDVMLGGTVAQVVESNIDTFAVGDLVVSNSGWQDYSVSDGEGVLKL
CHHHHHHCCCCHHHCCCHHCHHHHHHHHCCCCEEEECEEEEECCCCCCCCCCCCCCEEEE
DKNMANPSYGLGVLGMPGFTGYMGLTDIGKPKKGETLVVAAATGPVGATVGQVGNQLGLR
CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCE
TVGVAGGAEKCAYAVEELGFDVCLDHKADDFAEQLAIACPNGIDIYYENVGGKVFDGVLP
EEECCCCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHH
LLNAHARIPVCGLVSQYNATELPDGKDRLGVLMGNILSKRLTIKGFIIFEEYGDHFPEFL
HHCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCEEEEEEEEEHHHCCHHHHHH
ATMSKWLESGDVKTKEHQVDGLAQAPQAFFDMLDGKNFGKTVIKVADVQ
HHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEECCC
>Mature Secondary Structure 
SFNEQQNPQQNRQIKLASRPHGAPTADNFELATGDIPKPNQSEMLLRTVYLSLDPYMRG
CCCCCCCCCCCCEEEEECCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCHHHHC
RMSDAASYADPLEIGDVMLGGTVAQVVESNIDTFAVGDLVVSNSGWQDYSVSDGEGVLKL
CHHHHHHCCCCHHHCCCHHCHHHHHHHHCCCCEEEECEEEEECCCCCCCCCCCCCCEEEE
DKNMANPSYGLGVLGMPGFTGYMGLTDIGKPKKGETLVVAAATGPVGATVGQVGNQLGLR
CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCE
TVGVAGGAEKCAYAVEELGFDVCLDHKADDFAEQLAIACPNGIDIYYENVGGKVFDGVLP
EEECCCCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHH
LLNAHARIPVCGLVSQYNATELPDGKDRLGVLMGNILSKRLTIKGFIIFEEYGDHFPEFL
HHCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCEEEEEEEEEHHHCCHHHHHH
ATMSKWLESGDVKTKEHQVDGLAQAPQAFFDMLDGKNFGKTVIKVADVQ
HHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]