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The map label for this gene is ydiU [C]

Identifier: 93005826

GI number: 93005826

Start: 1191717

End: 1193183

Strand: Reverse

Name: ydiU [C]

Synonym: Pcryo_0998

Alternate gene names: 93005826

Gene position: 1193183-1191717 (Counterclockwise)

Preceding gene: 93005827

Following gene: 93005825

Centisome position: 38.99

GC content: 46.28

Gene sequence:

>1467_bases
ATGCGCTATCAAAACACCTATGCTCAATTGGACACCCGTCTTTATAATGAGCAACTGCCAAACCCATTAGACAATCCTCG
TGTCGGTCATTTTAATATTCAAGTTGCTGAGCAGCTGGGCTGGACGGAAGATACAGATTTGATGAATCGTTGGGTTGAAA
TACTTGGCGGACAGTATGTGCCAGCTGAATTTCAGCCTTTATCAATGGCGTATGCCGGTCACCAGTTTGGGCAATGGGCG
GGGCAATTGGGCGATGGTCGCGGCTTATTGATGGCGCAAGTACTCGATAAAAACAATCAATTACAAGATTTACATCTAAA
GGGTGCAGGCTTGACGCCCTACTCACGCATGGGCGATGGGCGTGCAGTATTACGCAGTACCATTCGTGAGTATTTATGTG
GTCATGCGCTCACTCAGCTTGGTATTGCCTCATCTAATGCCTTGGGATTTGTGGTATCAGATACCAAAGTGCGCCGCGAA
CGAATAGAAGCAGGAGCGGCTTTAATGCGCGTCGCTGACAGTCATATTCGCTTAGGTCATATTGAGTGGATTGCCAGCTT
TGCGCCCGACTTACTCGCTGAATTTACCGATTATATGATTGATACTTATTATCCAGAGTGCCGTGATAGTGACACGCCAG
TCTTAGCATTTTTGCAGGCGGTGGTTGAATGTACTGCACGGATGATAGCTGATTGGCAACTGATTGGATTTGCGCATGGT
GTTATGAATACTGATAACTTGTCTATTACCGGCAGTACTCTAGATTTTGGTCCATTTGGTTTTATGGAACGCTTTAACCC
TGCTTGGATCAACAATCACTCTGATCATAGCGGACGCTACGCTTATCAAAATCAACCTGCTATTGGTCATTGGAATCTAA
ATATTTGGTTACCGCACTTTATGCGTCTAGACGGTGTGACGCGCGAGACGTTAGCAGATTGTCTAGCGCCTTATGAGGCG
ACCTTTATGCAGCATTATCAGCAAGGGCTATGCCGTAAGCTTGGGTTGCCACATCAGCGTGAAAGTTTAAGCTTAGCGTT
TGAATGGTTGACACTGCTAGAGGATAGTTTACTCGACTATACCAATAGTTTCCGAGCGTTATTAGGATTAATCGCACCGG
ATGAGCATCATTATGAGCAGCAGTTGCTTGCAACCCTGACGGCCGAGCTGAATCCTGAAGCACAGCAAGTCTGGCAAGCA
TGGTCGATCCGTTATCTGGCACAAGTAAAGCAGGTATCGATTACTCAAGCAATTGAGGATATGCAAGCCAGCAATCCTAT
TTATGTATTGCGTAACAGCATGGCTCAGCGTGTTATCGTTGCCGCAGAGCAAGGACAGTTTAAAGAACTAAATAGAGTAT
TCGAGTTGCTTGCTAGCCCTTACACGCTACATGATAGCGCCATTGACCTTGATACCTTACCGCCTGCGCCTCATGCACCG
CAAATGCCAATCAGCTGTTCATCTTAA

Upstream 100 bases:

>100_bases
GTGCAATGCTGCTATATCAAGGCTATGTTATAGTGAGTTTATTCTATTCATATCTTAAATCTCCTCTCCCAGCTTTTATC
TTTAAATTGGAACAGCTCTT

Downstream 100 bases:

>100_bases
TATATATTTATTCTGTAATATTTTGAAATATTTTGCATTTAGGGTTGATATTTGGGTCATTTTTTTGGCATTATCAACTA
GCTAAATAATGAATATCAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 488; Mature: 488

Protein sequence:

>488_residues
MRYQNTYAQLDTRLYNEQLPNPLDNPRVGHFNIQVAEQLGWTEDTDLMNRWVEILGGQYVPAEFQPLSMAYAGHQFGQWA
GQLGDGRGLLMAQVLDKNNQLQDLHLKGAGLTPYSRMGDGRAVLRSTIREYLCGHALTQLGIASSNALGFVVSDTKVRRE
RIEAGAALMRVADSHIRLGHIEWIASFAPDLLAEFTDYMIDTYYPECRDSDTPVLAFLQAVVECTARMIADWQLIGFAHG
VMNTDNLSITGSTLDFGPFGFMERFNPAWINNHSDHSGRYAYQNQPAIGHWNLNIWLPHFMRLDGVTRETLADCLAPYEA
TFMQHYQQGLCRKLGLPHQRESLSLAFEWLTLLEDSLLDYTNSFRALLGLIAPDEHHYEQQLLATLTAELNPEAQQVWQA
WSIRYLAQVKQVSITQAIEDMQASNPIYVLRNSMAQRVIVAAEQGQFKELNRVFELLASPYTLHDSAIDLDTLPPAPHAP
QMPISCSS

Sequences:

>Translated_488_residues
MRYQNTYAQLDTRLYNEQLPNPLDNPRVGHFNIQVAEQLGWTEDTDLMNRWVEILGGQYVPAEFQPLSMAYAGHQFGQWA
GQLGDGRGLLMAQVLDKNNQLQDLHLKGAGLTPYSRMGDGRAVLRSTIREYLCGHALTQLGIASSNALGFVVSDTKVRRE
RIEAGAALMRVADSHIRLGHIEWIASFAPDLLAEFTDYMIDTYYPECRDSDTPVLAFLQAVVECTARMIADWQLIGFAHG
VMNTDNLSITGSTLDFGPFGFMERFNPAWINNHSDHSGRYAYQNQPAIGHWNLNIWLPHFMRLDGVTRETLADCLAPYEA
TFMQHYQQGLCRKLGLPHQRESLSLAFEWLTLLEDSLLDYTNSFRALLGLIAPDEHHYEQQLLATLTAELNPEAQQVWQA
WSIRYLAQVKQVSITQAIEDMQASNPIYVLRNSMAQRVIVAAEQGQFKELNRVFELLASPYTLHDSAIDLDTLPPAPHAP
QMPISCSS
>Mature_488_residues
MRYQNTYAQLDTRLYNEQLPNPLDNPRVGHFNIQVAEQLGWTEDTDLMNRWVEILGGQYVPAEFQPLSMAYAGHQFGQWA
GQLGDGRGLLMAQVLDKNNQLQDLHLKGAGLTPYSRMGDGRAVLRSTIREYLCGHALTQLGIASSNALGFVVSDTKVRRE
RIEAGAALMRVADSHIRLGHIEWIASFAPDLLAEFTDYMIDTYYPECRDSDTPVLAFLQAVVECTARMIADWQLIGFAHG
VMNTDNLSITGSTLDFGPFGFMERFNPAWINNHSDHSGRYAYQNQPAIGHWNLNIWLPHFMRLDGVTRETLADCLAPYEA
TFMQHYQQGLCRKLGLPHQRESLSLAFEWLTLLEDSLLDYTNSFRALLGLIAPDEHHYEQQLLATLTAELNPEAQQVWQA
WSIRYLAQVKQVSITQAIEDMQASNPIYVLRNSMAQRVIVAAEQGQFKELNRVFELLASPYTLHDSAIDLDTLPPAPHAP
QMPISCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=388, Percent_Identity=36.0824742268041, Blast_Score=231, Evalue=1e-60,
Organism=Escherichia coli, GI1787999, Length=481, Percent_Identity=41.1642411642412, Blast_Score=331, Evalue=6e-92,
Organism=Saccharomyces cerevisiae, GI6325034, Length=305, Percent_Identity=36.0655737704918, Blast_Score=176, Evalue=9e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 55100; Mature: 55100

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYQNTYAQLDTRLYNEQLPNPLDNPRVGHFNIQVAEQLGWTEDTDLMNRWVEILGGQYV
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHCCCCC
PAEFQPLSMAYAGHQFGQWAGQLGDGRGLLMAQVLDKNNQLQDLHLKGAGLTPYSRMGDG
CCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCHHHCCCC
RAVLRSTIREYLCGHALTQLGIASSNALGFVVSDTKVRRERIEAGAALMRVADSHIRLGH
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCEEHH
IEWIASFAPDLLAEFTDYMIDTYYPECRDSDTPVLAFLQAVVECTARMIADWQLIGFAHG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VMNTDNLSITGSTLDFGPFGFMERFNPAWINNHSDHSGRYAYQNQPAIGHWNLNIWLPHF
CCCCCCEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEECCCCCEEEEEEEEECHHH
MRLDGVTRETLADCLAPYEATFMQHYQQGLCRKLGLPHQRESLSLAFEWLTLLEDSLLDY
HHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
TNSFRALLGLIAPDEHHYEQQLLATLTAELNPEAQQVWQAWSIRYLAQVKQVSITQAIED
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MQASNPIYVLRNSMAQRVIVAAEQGQFKELNRVFELLASPYTLHDSAIDLDTLPPAPHAP
HHCCCCEEEEHHHHHHHEEEEECCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCC
QMPISCSS
CCCCCCCC
>Mature Secondary Structure
MRYQNTYAQLDTRLYNEQLPNPLDNPRVGHFNIQVAEQLGWTEDTDLMNRWVEILGGQYV
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHCCCCC
PAEFQPLSMAYAGHQFGQWAGQLGDGRGLLMAQVLDKNNQLQDLHLKGAGLTPYSRMGDG
CCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCHHHCCCC
RAVLRSTIREYLCGHALTQLGIASSNALGFVVSDTKVRRERIEAGAALMRVADSHIRLGH
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCEEHH
IEWIASFAPDLLAEFTDYMIDTYYPECRDSDTPVLAFLQAVVECTARMIADWQLIGFAHG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VMNTDNLSITGSTLDFGPFGFMERFNPAWINNHSDHSGRYAYQNQPAIGHWNLNIWLPHF
CCCCCCEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEECCCCCEEEEEEEEECHHH
MRLDGVTRETLADCLAPYEATFMQHYQQGLCRKLGLPHQRESLSLAFEWLTLLEDSLLDY
HHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
TNSFRALLGLIAPDEHHYEQQLLATLTAELNPEAQQVWQAWSIRYLAQVKQVSITQAIED
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MQASNPIYVLRNSMAQRVIVAAEQGQFKELNRVFELLASPYTLHDSAIDLDTLPPAPHAP
HHCCCCEEEEHHHHHHHEEEEECCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCC
QMPISCSS
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA