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The map label for this gene is ycfQ [H]

Identifier: 93005797

GI number: 93005797

Start: 1156189

End: 1156797

Strand: Direct

Name: ycfQ [H]

Synonym: Pcryo_0969

Alternate gene names: 93005797

Gene position: 1156189-1156797 (Clockwise)

Preceding gene: 93005794

Following gene: 93005810

Centisome position: 37.79

GC content: 48.11

Gene sequence:

>609_bases
ATGTCACGTACCACATTATATAATCGTCATGAAGCATTAGAGCGGGCCATACAGCTGTTTTGGCAAAAAGGCTTTCATGC
AACCTCTTTAAAGGATATCGAGCAAGCGCTTGACATGCGACCAGGCAGTATTTATGCCGCTTTTGGTAATAAAGACGGAT
TGTTTCAAGAAGCGCTTGATTACTATGCGCAGGCAGGGCTAAAGGAGCTTGAGCGTACATTAGCCAGCTATGAATCCCCT
TTATTAGGATTGGCAGCTTACATGCGTCAGCTTGGCGGTATCCGCGAAAAAAACCTGCCCAGTCGGGCATGTATGTTGGT
CAAAAGCTTACTTGAGCTTGGTGCCCGTGAACAGTTAGCGCTAGAGAAAGTTGAAAAATTACTAGCGGGTATGGAGGCGC
GTTTTGCCGCATGTTTTGTGGAAGCGCAGCAGCTAGGAGAGCTGGATGACACACTCGATCCACTGAGGTTGGCCCGTCGA
TTACAAGCCGAGGTTATGGGGTTACGTGCTTTTGCTCAGCGCGATGTTGACAGTGCGGCGGTTCATGCGCTTGCAGAGGA
TATGGCGTATTCTATAGAAAGCTTGCGCAATAATGAGTCTGTTGGTTAA

Upstream 100 bases:

>100_bases
GGACTTGAGTAATCATTCAAGATAAAATTGAGTAGTCACTCAAATTGTATAACCATGTTTACTTTATTGTCTAAAATCAT
GGGATAAAAATTGGAATATT

Downstream 100 bases:

>100_bases
AACGATGCCTAGTGGCCAAGCTTACGTTCGCTAGTATGATGGTCATTTAAGCTAAAAATCGAACATGAGTATGGATATTA
ACGGTCATTTGTATAATAGC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MSRTTLYNRHEALERAIQLFWQKGFHATSLKDIEQALDMRPGSIYAAFGNKDGLFQEALDYYAQAGLKELERTLASYESP
LLGLAAYMRQLGGIREKNLPSRACMLVKSLLELGAREQLALEKVEKLLAGMEARFAACFVEAQQLGELDDTLDPLRLARR
LQAEVMGLRAFAQRDVDSAAVHALAEDMAYSIESLRNNESVG

Sequences:

>Translated_202_residues
MSRTTLYNRHEALERAIQLFWQKGFHATSLKDIEQALDMRPGSIYAAFGNKDGLFQEALDYYAQAGLKELERTLASYESP
LLGLAAYMRQLGGIREKNLPSRACMLVKSLLELGAREQLALEKVEKLLAGMEARFAACFVEAQQLGELDDTLDPLRLARR
LQAEVMGLRAFAQRDVDSAAVHALAEDMAYSIESLRNNESVG
>Mature_201_residues
SRTTLYNRHEALERAIQLFWQKGFHATSLKDIEQALDMRPGSIYAAFGNKDGLFQEALDYYAQAGLKELERTLASYESPL
LGLAAYMRQLGGIREKNLPSRACMLVKSLLELGAREQLALEKVEKLLAGMEARFAACFVEAQQLGELDDTLDPLRLARRL
QAEVMGLRAFAQRDVDSAAVHALAEDMAYSIESLRNNESVG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=175, Percent_Identity=27.4285714285714, Blast_Score=68, Evalue=4e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22557; Mature: 22426

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRTTLYNRHEALERAIQLFWQKGFHATSLKDIEQALDMRPGSIYAAFGNKDGLFQEALD
CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHH
YYAQAGLKELERTLASYESPLLGLAAYMRQLGGIREKNLPSRACMLVKSLLELGAREQLA
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHH
LEKVEKLLAGMEARFAACFVEAQQLGELDDTLDPLRLARRLQAEVMGLRAFAQRDVDSAA
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
VHALAEDMAYSIESLRNNESVG
HHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SRTTLYNRHEALERAIQLFWQKGFHATSLKDIEQALDMRPGSIYAAFGNKDGLFQEALD
CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHH
YYAQAGLKELERTLASYESPLLGLAAYMRQLGGIREKNLPSRACMLVKSLLELGAREQLA
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHH
LEKVEKLLAGMEARFAACFVEAQQLGELDDTLDPLRLARRLQAEVMGLRAFAQRDVDSAA
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
VHALAEDMAYSIESLRNNESVG
HHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]