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The map label for this gene is ydgC [H]

Identifier: 93005793

GI number: 93005793

Start: 1151960

End: 1152334

Strand: Direct

Name: ydgC [H]

Synonym: Pcryo_0965

Alternate gene names: 93005793

Gene position: 1151960-1152334 (Clockwise)

Preceding gene: 93005792

Following gene: 93005794

Centisome position: 37.65

GC content: 42.67

Gene sequence:

>375_bases
ATGTTCAGCCCTTATCATTCAACAGGAGATGATCCCGTCGTGATTTGGTTAAAAATGCTTATTGGCGCTCTAATGGTACT
GGCGATTCAATTATTTGCGCAAACTCGATTTTTTTATTTGGCGGCACTTGCGCCACTTTTCCCCACCTTTACATTAATCA
GTCACTTCATCGTCGGTACTGAGCGTAGTCCTGCTGATTTAAGGGTCGCACTAATATTTAGTATGCTTGGTGTCATTCCG
CACCTTATTTATACCTTTGTGGTGTTCTTTAGCATCAGCTATATCAGTTTATATAAGGCACTGCTGCTCGGCGTTGTCGC
TTGGACAATAGCGGCGGCAATTTTAGTACTTACTTGGCAATACATTCAGGCTTAG

Upstream 100 bases:

>100_bases
CTAGATGGGTTTTTTTTGAGCCTTTTTATGGTGTAAGTCAATTAAGCTGTTGTTCCTCTTATATCGCTTTGCAGACTTTA
GTATCATGGTGGATTGGGCT

Downstream 100 bases:

>100_bases
GTGTTACTAAGCAAGACCACTTAAATCATGCAAAAATACACGATAGTAATTACATATCTGAAATTGGATGTATGTTCTTA
TAAATATTTTCTATGAATTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 124

Protein sequence:

>124_residues
MFSPYHSTGDDPVVIWLKMLIGALMVLAIQLFAQTRFFYLAALAPLFPTFTLISHFIVGTERSPADLRVALIFSMLGVIP
HLIYTFVVFFSISYISLYKALLLGVVAWTIAAAILVLTWQYIQA

Sequences:

>Translated_124_residues
MFSPYHSTGDDPVVIWLKMLIGALMVLAIQLFAQTRFFYLAALAPLFPTFTLISHFIVGTERSPADLRVALIFSMLGVIP
HLIYTFVVFFSISYISLYKALLLGVVAWTIAAAILVLTWQYIQA
>Mature_124_residues
MFSPYHSTGDDPVVIWLKMLIGALMVLAIQLFAQTRFFYLAALAPLFPTFTLISHFIVGTERSPADLRVALIFSMLGVIP
HLIYTFVVFFSISYISLYKALLLGVVAWTIAAAILVLTWQYIQA

Specific function: Unknown

COG id: COG3136

COG function: function code R; Uncharacterized membrane protein required for alginate biosynthesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To P.aeruginosa glpM [H]

Homologues:

Organism=Escherichia coli, GI1787892, Length=103, Percent_Identity=40.7766990291262, Blast_Score=83, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009707
- ProDom:   PD028709 [H]

Pfam domain/function: PF06942 GlpM [H]

EC number: NA

Molecular weight: Translated: 13903; Mature: 13903

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSPYHSTGDDPVVIWLKMLIGALMVLAIQLFAQTRFFYLAALAPLFPTFTLISHFIVGT
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ERSPADLRVALIFSMLGVIPHLIYTFVVFFSISYISLYKALLLGVVAWTIAAAILVLTWQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YIQA
HHHC
>Mature Secondary Structure
MFSPYHSTGDDPVVIWLKMLIGALMVLAIQLFAQTRFFYLAALAPLFPTFTLISHFIVGT
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ERSPADLRVALIFSMLGVIPHLIYTFVVFFSISYISLYKALLLGVVAWTIAAAILVLTWQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YIQA
HHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]