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The map label for this gene is 93005667

Identifier: 93005667

GI number: 93005667

Start: 989865

End: 990992

Strand: Direct

Name: 93005667

Synonym: Pcryo_0837

Alternate gene names: NA

Gene position: 989865-990992 (Clockwise)

Preceding gene: 93005665

Following gene: 93005668

Centisome position: 32.35

GC content: 44.68

Gene sequence:

>1128_bases
ATGGCGAAGTCAAATCAACCAACCAATATACAAGATGTGCGCCATGATTATGAGCACTTGGCGAGCCTCGCAAACTTACG
TTATGTCAGCGATACCGATCCTGGATATGGGCGTCGGCGTTCTGGGCGTGGCTTTACTTATCGAGATGCCACTGGCAAAA
CGGTCAAAGATAAAGCCTTGCGTCAGCGCTTTGATGCTTTAGTCATACCGCCGATGTGGTCAGAAGTTTGGATATGCCAA
GATGATAAAGGACATCTACAATCGACAGGTCGAGATGATAAAGCGCGTAAGCAGTATTTATATCATTCAGAGTGGGATCG
GGTACGTGACCAAGCCAAGTTTAATGCCATGATAGGTTTTGCTGAAGCATTGCCCAATCTGCGTGCGCAAGTTGAAAAAG
ATTTAGAAGCCAAACCCTTATCACGTGACAATGTGTTGGCAGCAGTGGTCAAATTACTTGAGACCACTTTGATTCGTATC
GGTAATAGTCGTTACGCCAAGCTCAATAAAAGTTATGGTTTAAGCACGTTACGCAGTAAGCATGTCAGCGAAACGGATAC
TGGACTGGCATTTGACTTTGTCGGTAAAAGTGCCAAAGAGCATCATATAGAATTGCAAGATGAGCGTTTGATTGACATCA
TCCAAGCGTGCTCTGAGCTGCCCGGTTATCAAGTATTCAAATACTTAGATGAAGAGGGCAATAAGCAAGTCGTTGATAGC
GCTGATATCAATGATTATCTGCGTACGCATACCTGTGGTAATGAGTGTGAAAGTTATAGCGGCAATTTATACAGTGCAAA
AGACTTTCGTACTTGGATGGCAAGTGTATTGGCAGCAAGCTACCTTTATGATGAGCTGCAAACCAAATCTGGTAAATTGA
TTTTAGCCAGTGCGCTCGATAGTAAAGAGCGTCAGCAACTGGTGACTGATATGGTAAAAAGCGTCGCCGATGAGCTCGGC
AATACCCCAACGGTCTGTCGATCCTCTTATATCAATCCTATTATTATCCAGCAGTTTTTAGCAGGGGAGTTTTTTGAGCC
TTATAAACAAGCGCGCCGTGGACGTACCAAACGGCATCAAAGCTGTGAAGAGAAGGCGTTACTTGGGTTTTTGAGCGCGC
GACAGTAA

Upstream 100 bases:

>100_bases
TATTTTACACAGCATTACACATTGTCCATGGCAAGTACACAGCAATGATAATGGCGGTTGATTATGCTAAAACAACGATA
TTAGTAAATGAGTATTTTTT

Downstream 100 bases:

>100_bases
ACCATTACTAAGTAACTGTTTTTAGGGAATAATAAAAATGATACGTTATGTATTGAAATAAGTATAAAAATACGTTACTA
ATAGAGCATGTGCCATTTAA

Product: DNA topoisomerase, type I

Products: NA

Alternate protein names: DNA poisomerase I; DNA poisomerase Type I; DNA poisomerase IB; Type I poisomerase; DNA poisomerase I Protein; Poisomerase IB; Poisomerase IB-Like Protein; DNA poisomerase I-Like Protein; Viral-Like DNA poisomerase; DNA poisomerase ; Eukaryotic-Like DNA poisomerase I; DNA poisomerasei; -Like DNA poisomerase I; Type I DNA poisomerase

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MAKSNQPTNIQDVRHDYEHLASLANLRYVSDTDPGYGRRRSGRGFTYRDATGKTVKDKALRQRFDALVIPPMWSEVWICQ
DDKGHLQSTGRDDKARKQYLYHSEWDRVRDQAKFNAMIGFAEALPNLRAQVEKDLEAKPLSRDNVLAAVVKLLETTLIRI
GNSRYAKLNKSYGLSTLRSKHVSETDTGLAFDFVGKSAKEHHIELQDERLIDIIQACSELPGYQVFKYLDEEGNKQVVDS
ADINDYLRTHTCGNECESYSGNLYSAKDFRTWMASVLAASYLYDELQTKSGKLILASALDSKERQQLVTDMVKSVADELG
NTPTVCRSSYINPIIIQQFLAGEFFEPYKQARRGRTKRHQSCEEKALLGFLSARQ

Sequences:

>Translated_375_residues
MAKSNQPTNIQDVRHDYEHLASLANLRYVSDTDPGYGRRRSGRGFTYRDATGKTVKDKALRQRFDALVIPPMWSEVWICQ
DDKGHLQSTGRDDKARKQYLYHSEWDRVRDQAKFNAMIGFAEALPNLRAQVEKDLEAKPLSRDNVLAAVVKLLETTLIRI
GNSRYAKLNKSYGLSTLRSKHVSETDTGLAFDFVGKSAKEHHIELQDERLIDIIQACSELPGYQVFKYLDEEGNKQVVDS
ADINDYLRTHTCGNECESYSGNLYSAKDFRTWMASVLAASYLYDELQTKSGKLILASALDSKERQQLVTDMVKSVADELG
NTPTVCRSSYINPIIIQQFLAGEFFEPYKQARRGRTKRHQSCEEKALLGFLSARQ
>Mature_374_residues
AKSNQPTNIQDVRHDYEHLASLANLRYVSDTDPGYGRRRSGRGFTYRDATGKTVKDKALRQRFDALVIPPMWSEVWICQD
DKGHLQSTGRDDKARKQYLYHSEWDRVRDQAKFNAMIGFAEALPNLRAQVEKDLEAKPLSRDNVLAAVVKLLETTLIRIG
NSRYAKLNKSYGLSTLRSKHVSETDTGLAFDFVGKSAKEHHIELQDERLIDIIQACSELPGYQVFKYLDEEGNKQVVDSA
DINDYLRTHTCGNECESYSGNLYSAKDFRTWMASVLAASYLYDELQTKSGKLILASALDSKERQQLVTDMVKSVADELGN
TPTVCRSSYINPIIIQQFLAGEFFEPYKQARRGRTKRHQSCEEKALLGFLSARQ

Specific function: Unknown

COG id: COG3569

COG function: function code L; Topoisomerase IB

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42670; Mature: 42538

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSNQPTNIQDVRHDYEHLASLANLRYVSDTDPGYGRRRSGRGFTYRDATGKTVKDKAL
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHH
RQRFDALVIPPMWSEVWICQDDKGHLQSTGRDDKARKQYLYHSEWDRVRDQAKFNAMIGF
HHHHCEEECCCCCCCEEEEECCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEALPNLRAQVEKDLEAKPLSRDNVLAAVVKLLETTLIRIGNSRYAKLNKSYGLSTLRSK
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHH
HVSETDTGLAFDFVGKSAKEHHIELQDERLIDIIQACSELPGYQVFKYLDEEGNKQVVDS
HCCCCCCCCCHHHHCCCCHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEECCC
ADINDYLRTHTCGNECESYSGNLYSAKDFRTWMASVLAASYLYDELQTKSGKLILASALD
CCHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHC
SKERQQLVTDMVKSVADELGNTPTVCRSSYINPIIIQQFLAGEFFEPYKQARRGRTKRHQ
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
SCEEKALLGFLSARQ
HHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKSNQPTNIQDVRHDYEHLASLANLRYVSDTDPGYGRRRSGRGFTYRDATGKTVKDKAL
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHH
RQRFDALVIPPMWSEVWICQDDKGHLQSTGRDDKARKQYLYHSEWDRVRDQAKFNAMIGF
HHHHCEEECCCCCCCEEEEECCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEALPNLRAQVEKDLEAKPLSRDNVLAAVVKLLETTLIRIGNSRYAKLNKSYGLSTLRSK
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHH
HVSETDTGLAFDFVGKSAKEHHIELQDERLIDIIQACSELPGYQVFKYLDEEGNKQVVDS
HCCCCCCCCCHHHHCCCCHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEECCC
ADINDYLRTHTCGNECESYSGNLYSAKDFRTWMASVLAASYLYDELQTKSGKLILASALD
CCHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHC
SKERQQLVTDMVKSVADELGNTPTVCRSSYINPIIIQQFLAGEFFEPYKQARRGRTKRHQ
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
SCEEKALLGFLSARQ
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA