Click here to switch to the map view.

The map label for this gene is fixN [H]

Identifier: 93005614

GI number: 93005614

Start: 922392

End: 923873

Strand: Reverse

Name: fixN [H]

Synonym: Pcryo_0784

Alternate gene names: 93005614

Gene position: 923873-922392 (Counterclockwise)

Preceding gene: 93005616

Following gene: 93005613

Centisome position: 30.19

GC content: 42.91

Gene sequence:

>1482_bases
ATGAGTTTACAAAACACAGCACTCGCCCCCATTGACCGTGAATATGAAATTACTATCGTAAGATTCTTTACGGTTATGGC
CGTGGTATGGGGCATCGTCGGCATGAGTATTGGTGTGTTCATTGCTTCTCAGTTAGCATGGCCAGCACTCAATTTTGACA
TTCCATGGCTGACTTTTAGTCGTTTAAGACCACTGCACACCAATGCGGTTATTTTTGCGTTCGGTGGCTCAGCCTTGTTC
GCAACGTCTTATTACATCGTTCAGCGTACTTGTAAGACAAGATTATTTGCGCCTTACTTAGCTTGGTTTACCTTTTGGGG
TTGGCAGACGGTTATCGTAGCGGCTGTTATTACCTTACCATTAGGTTTAACCTCGACTAAAGAATACGCTGAGCTTGAGT
GGCCGATTGATATCCTTATCGCATTGGTATGGATTTCATATGCCATTGTCTTCTTCGGTACGCTAATTAAGCGTAAAACG
TCACATATCTATGTGGCTAACTGGTTCTTTGCTGCCTTTATTATTACGATTGCGCTACTGCATATTGTAAATAGCATGGC
GATTCCTGTTAGTGCATTTAAGTCTTACTCGCTATTTGGCGGTGCAACCGATGCCATGGTGCAGTGGTGGTATGGGCATA
ATGCGGTAGGCTTCTATTTGACGGCTGCTTTCTTAGGCATGATGTATTATTTCGTGCCAGTACAGATTGGTCGCCCAATT
TATTCTTACCGTTTGTCTATCGTTCACTTTTGGGCATTGATTGCTTCATACATGTGGGCTGGTGGTCACCATTTGCATTA
TTCAGCACTTCCAGATTGGACGCAGTCATTAGCAATGGTATTCTCTATTATTCTATTTGCTCCATCTTGGGGTGGTATGA
TTAACGGTGTACTAACGCTTTCAGGTAGTTGGGATAAACTGCGTACCGATCCGATCATTCGCTTTATGATTGTCGCTTTG
TCATTCTATGCCATGTCGACGTTTGAAGGTCCAATGATGTCTATTAAGACTGTCAATGCGCTATCGCATAATACGGATTG
GACAGTTGGTCATGTACACTCAGGTGCGCTTGGCTGGGTTGGTATGATTACCATTGGTTCGCTATATGTACTGTTACCAC
GTATTTATAACAAGCCAAAAATGTATTCTATCAGCTTGATCACAACGCATTTCTGGCTAGCAACAGCAGGTACCATTTTC
TATATCGTCTCTATGTGGATTTCAGGTATTGGCCAAGGCATGATGTGGCTTGCGACCAACCCTGATGGTACTTTGGTATA
CAGCTTTGTTGATACCGTTGAGTTCTCGCATTTCCCATATATTGGTCGTGCGTTTGGTGGTCTTCTGTATGTATCTGGTA
TGTTTGTAATGGCATATAATGTCTATAGAACAATCAAGATGCCAGAAGGTAAGCCAGTAGACATTGCTGATCCGACTGAT
CATGAACCTAGTGTCGATCAAATCTCGACAGCTAAAGTATAA

Upstream 100 bases:

>100_bases
TTACCAAAGCCATTGTTTGGTTATGATCTTTATCATGATCTAGATGACATGGCATGTTAGTTAATTCTGTTGATAATTCG
GGCTGTAAAGGAATCATCCA

Downstream 100 bases:

>100_bases
GGAGCGATCATGGCTGGTACACCGCATGAAATTATTGAAAAAAATACAGGCTTGTTGGTCATCGGTATCGTTATTGCTAT
TAGCTTTGCAACGCTCGTTG

Product: cbb3-type cytochrome c oxidase subunit I

Products: NA

Alternate protein names: Cytochrome CBB3 subunit 1; Cytochrome c oxidase polypeptide I homolog; Heme B/copper cytochrome c oxidase subunit [H]

Number of amino acids: Translated: 493; Mature: 492

Protein sequence:

>493_residues
MSLQNTALAPIDREYEITIVRFFTVMAVVWGIVGMSIGVFIASQLAWPALNFDIPWLTFSRLRPLHTNAVIFAFGGSALF
ATSYYIVQRTCKTRLFAPYLAWFTFWGWQTVIVAAVITLPLGLTSTKEYAELEWPIDILIALVWISYAIVFFGTLIKRKT
SHIYVANWFFAAFIITIALLHIVNSMAIPVSAFKSYSLFGGATDAMVQWWYGHNAVGFYLTAAFLGMMYYFVPVQIGRPI
YSYRLSIVHFWALIASYMWAGGHHLHYSALPDWTQSLAMVFSIILFAPSWGGMINGVLTLSGSWDKLRTDPIIRFMIVAL
SFYAMSTFEGPMMSIKTVNALSHNTDWTVGHVHSGALGWVGMITIGSLYVLLPRIYNKPKMYSISLITTHFWLATAGTIF
YIVSMWISGIGQGMMWLATNPDGTLVYSFVDTVEFSHFPYIGRAFGGLLYVSGMFVMAYNVYRTIKMPEGKPVDIADPTD
HEPSVDQISTAKV

Sequences:

>Translated_493_residues
MSLQNTALAPIDREYEITIVRFFTVMAVVWGIVGMSIGVFIASQLAWPALNFDIPWLTFSRLRPLHTNAVIFAFGGSALF
ATSYYIVQRTCKTRLFAPYLAWFTFWGWQTVIVAAVITLPLGLTSTKEYAELEWPIDILIALVWISYAIVFFGTLIKRKT
SHIYVANWFFAAFIITIALLHIVNSMAIPVSAFKSYSLFGGATDAMVQWWYGHNAVGFYLTAAFLGMMYYFVPVQIGRPI
YSYRLSIVHFWALIASYMWAGGHHLHYSALPDWTQSLAMVFSIILFAPSWGGMINGVLTLSGSWDKLRTDPIIRFMIVAL
SFYAMSTFEGPMMSIKTVNALSHNTDWTVGHVHSGALGWVGMITIGSLYVLLPRIYNKPKMYSISLITTHFWLATAGTIF
YIVSMWISGIGQGMMWLATNPDGTLVYSFVDTVEFSHFPYIGRAFGGLLYVSGMFVMAYNVYRTIKMPEGKPVDIADPTD
HEPSVDQISTAKV
>Mature_492_residues
SLQNTALAPIDREYEITIVRFFTVMAVVWGIVGMSIGVFIASQLAWPALNFDIPWLTFSRLRPLHTNAVIFAFGGSALFA
TSYYIVQRTCKTRLFAPYLAWFTFWGWQTVIVAAVITLPLGLTSTKEYAELEWPIDILIALVWISYAIVFFGTLIKRKTS
HIYVANWFFAAFIITIALLHIVNSMAIPVSAFKSYSLFGGATDAMVQWWYGHNAVGFYLTAAFLGMMYYFVPVQIGRPIY
SYRLSIVHFWALIASYMWAGGHHLHYSALPDWTQSLAMVFSIILFAPSWGGMINGVLTLSGSWDKLRTDPIIRFMIVALS
FYAMSTFEGPMMSIKTVNALSHNTDWTVGHVHSGALGWVGMITIGSLYVLLPRIYNKPKMYSISLITTHFWLATAGTIFY
IVSMWISGIGQGMMWLATNPDGTLVYSFVDTVEFSHFPYIGRAFGGLLYVSGMFVMAYNVYRTIKMPEGKPVDIADPTDH
EPSVDQISTAKV

Specific function: Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. Co I is the catalytic subunit of the enzyme. Electrons originating in cytochrome

COG id: COG3278

COG function: function code O; Cbb3-type cytochrome oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the heme-copper respiratory oxidase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004677
- InterPro:   IPR000883 [H]

Pfam domain/function: PF00115 COX1 [H]

EC number: =1.9.3.1 [H]

Molecular weight: Translated: 55407; Mature: 55275

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: PS50855 COX1 ; PS00077 COX1_CUB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLQNTALAPIDREYEITIVRFFTVMAVVWGIVGMSIGVFIASQLAWPALNFDIPWLTFS
CCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
RLRPLHTNAVIFAFGGSALFATSYYIVQRTCKTRLFAPYLAWFTFWGWQTVIVAAVITLP
HCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LGLTSTKEYAELEWPIDILIALVWISYAIVFFGTLIKRKTSHIYVANWFFAAFIITIALL
CCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHH
HIVNSMAIPVSAFKSYSLFGGATDAMVQWWYGHNAVGFYLTAAFLGMMYYFVPVQIGRPI
HHHHHHCCCHHHHHHHHHCCCCHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCH
YSYRLSIVHFWALIASYMWAGGHHLHYSALPDWTQSLAMVFSIILFAPSWGGMINGVLTL
HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
SGSWDKLRTDPIIRFMIVALSFYAMSTFEGPMMSIKTVNALSHNTDWTVGHVHSGALGWV
CCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCCEEEEECCCCHHHH
GMITIGSLYVLLPRIYNKPKMYSISLITTHFWLATAGTIFYIVSMWISGIGQGMMWLATN
HHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
PDGTLVYSFVDTVEFSHFPYIGRAFGGLLYVSGMFVMAYNVYRTIKMPEGKPVDIADPTD
CCCCEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCC
HEPSVDQISTAKV
CCCCCCCCCCCCC
>Mature Secondary Structure 
SLQNTALAPIDREYEITIVRFFTVMAVVWGIVGMSIGVFIASQLAWPALNFDIPWLTFS
CCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
RLRPLHTNAVIFAFGGSALFATSYYIVQRTCKTRLFAPYLAWFTFWGWQTVIVAAVITLP
HCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LGLTSTKEYAELEWPIDILIALVWISYAIVFFGTLIKRKTSHIYVANWFFAAFIITIALL
CCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHH
HIVNSMAIPVSAFKSYSLFGGATDAMVQWWYGHNAVGFYLTAAFLGMMYYFVPVQIGRPI
HHHHHHCCCHHHHHHHHHCCCCHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCH
YSYRLSIVHFWALIASYMWAGGHHLHYSALPDWTQSLAMVFSIILFAPSWGGMINGVLTL
HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
SGSWDKLRTDPIIRFMIVALSFYAMSTFEGPMMSIKTVNALSHNTDWTVGHVHSGALGWV
CCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCCEEEEECCCCHHHH
GMITIGSLYVLLPRIYNKPKMYSISLITTHFWLATAGTIFYIVSMWISGIGQGMMWLATN
HHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
PDGTLVYSFVDTVEFSHFPYIGRAFGGLLYVSGMFVMAYNVYRTIKMPEGKPVDIADPTD
CCCCEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCC
HEPSVDQISTAKV
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8386371; 12597275 [H]