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The map label for this gene is yggB [C]

Identifier: 93005603

GI number: 93005603

Start: 911213

End: 912418

Strand: Reverse

Name: yggB [C]

Synonym: Pcryo_0773

Alternate gene names: 93005603

Gene position: 912418-911213 (Counterclockwise)

Preceding gene: 93005604

Following gene: 93005602

Centisome position: 29.82

GC content: 43.78

Gene sequence:

>1206_bases
ATGGATAAGATAATGGCAATCGCTAGTATTACTGAATTTTTTCAAGAGATTGCTCGCGATCTACATACTAGCCTTTTCCT
TGCCATTGGCGGCTCTATCGAGGAAGGCACCTTAGATTGGTCATCTAAATCAGTAGAACTGGTGAGCACTGGCATCAAAA
TTCTAATACTGCTTGCGATATCGGGGTTTATGTATTGGCTTGCTATTTATATACTAAAAAAAAGCAAAGCACGCATTCGT
CTGAATGAGCGCCGCGCTAAAATTGCCCGCTCAATCTTGCGTTATATATGGGCTGTAACCAGTGTCATTGCTATTATGAG
TCAGCTGAATTTTGAGCCAGATACCATTAAAGCCACTGCCAAAGCCAGTACATGGGCAGGGATATATTACGTGCTATGGA
CATCATCTGGACAAATTGTCCATAAAATCCTACAACACTATGGTTTAAACGCTTCTATTGAGCAGCTGCTTAAAAATATC
TTATCCGTATTATTGCTGGTATTAGGGCTTGCCAGCGTCATGGCACAGTTTGGCTTTGATATCGTCTCTTTAGTAGCAGG
TCTGGGTATTGCTGGTTTGGCAGTCGGCTTTGCCGCGCAGTCAACGCTTGCCAATTTTATCGCAGGTATTACTATTTTGC
TTGAGCAATCCTTTCAAGTTGGTGACTGGGTCAATATCAATGACAATGAAGGGCGCGTGGTGGTGATTGCCTTACGTACG
ACCCATGTCTTAACTCGTGATAATATTACGGTTATCATACCCAATTCGAATGTGGCCTCCTCCGTCGTTACCAACCTGAC
CTCCAAAAACTTTATCCGCTTTGATATTCAGATGCGTATTGCTTTTGAAGATGATATTGATAAAGCACGTGATGAGATTT
TACAGGTACTGTCTGATAGTGAGGCGGTCCTCAACCGACCTGAGTCTTCTGCGACTGTGGCAGAGATTGGCGAGTATGGC
GTATATTTTATTGTCCGCTTTTGGGTCAAACCAGCGGCAGTTGCTCGTATGCCCAAAATCAAAGAAGATTTACGAGAGAA
TATCAAACGCGCTTTTGATGCCGCTGATATCTCGACCCCTTATCCTCATATGCGCCTACTTATGCCAAGAGAAGACGTCT
ATCCGATTGTGACCAAACCCAAGCCATTGGCAACGACCGCGCAAACTGTTTCAGAGTCATTAGCGCTGAACAAAGACCAG
CATTAA

Upstream 100 bases:

>100_bases
TATATGGTTAAAGCAGTATTTGGTAAAAGCGGTTTTATTTATAATGATACGGTTAAAATCCTATTAGTACAGAGTAATAT
TTTTTAGAACCACACCTTTC

Downstream 100 bases:

>100_bases
TATCCTTGCAACTTATTTAGCATTTATATGCCATAAAAAGTTCTTTCAGATAGACATCTTTTAATCATCGCTTTCTTAAA
CATCAGCGCTTTAAACCATC

Product: mechanosensitive ion channel MscS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MDKIMAIASITEFFQEIARDLHTSLFLAIGGSIEEGTLDWSSKSVELVSTGIKILILLAISGFMYWLAIYILKKSKARIR
LNERRAKIARSILRYIWAVTSVIAIMSQLNFEPDTIKATAKASTWAGIYYVLWTSSGQIVHKILQHYGLNASIEQLLKNI
LSVLLLVLGLASVMAQFGFDIVSLVAGLGIAGLAVGFAAQSTLANFIAGITILLEQSFQVGDWVNINDNEGRVVVIALRT
THVLTRDNITVIIPNSNVASSVVTNLTSKNFIRFDIQMRIAFEDDIDKARDEILQVLSDSEAVLNRPESSATVAEIGEYG
VYFIVRFWVKPAAVARMPKIKEDLRENIKRAFDAADISTPYPHMRLLMPREDVYPIVTKPKPLATTAQTVSESLALNKDQ
H

Sequences:

>Translated_401_residues
MDKIMAIASITEFFQEIARDLHTSLFLAIGGSIEEGTLDWSSKSVELVSTGIKILILLAISGFMYWLAIYILKKSKARIR
LNERRAKIARSILRYIWAVTSVIAIMSQLNFEPDTIKATAKASTWAGIYYVLWTSSGQIVHKILQHYGLNASIEQLLKNI
LSVLLLVLGLASVMAQFGFDIVSLVAGLGIAGLAVGFAAQSTLANFIAGITILLEQSFQVGDWVNINDNEGRVVVIALRT
THVLTRDNITVIIPNSNVASSVVTNLTSKNFIRFDIQMRIAFEDDIDKARDEILQVLSDSEAVLNRPESSATVAEIGEYG
VYFIVRFWVKPAAVARMPKIKEDLRENIKRAFDAADISTPYPHMRLLMPREDVYPIVTKPKPLATTAQTVSESLALNKDQ
H
>Mature_401_residues
MDKIMAIASITEFFQEIARDLHTSLFLAIGGSIEEGTLDWSSKSVELVSTGIKILILLAISGFMYWLAIYILKKSKARIR
LNERRAKIARSILRYIWAVTSVIAIMSQLNFEPDTIKATAKASTWAGIYYVLWTSSGQIVHKILQHYGLNASIEQLLKNI
LSVLLLVLGLASVMAQFGFDIVSLVAGLGIAGLAVGFAAQSTLANFIAGITILLEQSFQVGDWVNINDNEGRVVVIALRT
THVLTRDNITVIIPNSNVASSVVTNLTSKNFIRFDIQMRIAFEDDIDKARDEILQVLSDSEAVLNRPESSATVAEIGEYG
VYFIVRFWVKPAAVARMPKIKEDLRENIKRAFDAADISTPYPHMRLLMPREDVYPIVTKPKPLATTAQTVSESLALNKDQ
H

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=231, Percent_Identity=26.8398268398268, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1787591, Length=127, Percent_Identity=34.6456692913386, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI2367355, Length=230, Percent_Identity=26.0869565217391, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1786670, Length=215, Percent_Identity=23.7209302325581, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 44455; Mature: 44455

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKIMAIASITEFFQEIARDLHTSLFLAIGGSIEEGTLDWSSKSVELVSTGIKILILLAI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
SGFMYWLAIYILKKSKARIRLNERRAKIARSILRYIWAVTSVIAIMSQLNFEPDTIKATA
HHHHHHHHHHHHHCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC
KASTWAGIYYVLWTSSGQIVHKILQHYGLNASIEQLLKNILSVLLLVLGLASVMAQFGFD
CCCCCCEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
IVSLVAGLGIAGLAVGFAAQSTLANFIAGITILLEQSFQVGDWVNINDNEGRVVVIALRT
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEEEEE
THVLTRDNITVIIPNSNVASSVVTNLTSKNFIRFDIQMRIAFEDDIDKARDEILQVLSDS
EEEEEECCEEEEECCCCHHHHHHHHHCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHCCC
EAVLNRPESSATVAEIGEYGVYFIVRFWVKPAAVARMPKIKEDLRENIKRAFDAADISTP
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHCCCCCC
YPHMRLLMPREDVYPIVTKPKPLATTAQTVSESLALNKDQH
CCCCEEECCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDKIMAIASITEFFQEIARDLHTSLFLAIGGSIEEGTLDWSSKSVELVSTGIKILILLAI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
SGFMYWLAIYILKKSKARIRLNERRAKIARSILRYIWAVTSVIAIMSQLNFEPDTIKATA
HHHHHHHHHHHHHCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC
KASTWAGIYYVLWTSSGQIVHKILQHYGLNASIEQLLKNILSVLLLVLGLASVMAQFGFD
CCCCCCEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
IVSLVAGLGIAGLAVGFAAQSTLANFIAGITILLEQSFQVGDWVNINDNEGRVVVIALRT
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEEEEE
THVLTRDNITVIIPNSNVASSVVTNLTSKNFIRFDIQMRIAFEDDIDKARDEILQVLSDS
EEEEEECCEEEEECCCCHHHHHHHHHCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHCCC
EAVLNRPESSATVAEIGEYGVYFIVRFWVKPAAVARMPKIKEDLRENIKRAFDAADISTP
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHCCCCCC
YPHMRLLMPREDVYPIVTKPKPLATTAQTVSESLALNKDQH
CCCCEEECCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]