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The map label for this gene is copB [H]

Identifier: 93005526

GI number: 93005526

Start: 826172

End: 827326

Strand: Reverse

Name: copB [H]

Synonym: Pcryo_0696

Alternate gene names: 93005526

Gene position: 827326-826172 (Counterclockwise)

Preceding gene: 93005527

Following gene: 93005525

Centisome position: 27.04

GC content: 45.28

Gene sequence:

>1155_bases
ATGAAAATACATAAAGTAGGTTTACGGTTCGCTGGGGCATCATCATTGGTACTGCTGGCATCATCATTTGCTAATGCTGC
TGACCCGTCCACTGCTAAAAAAGACATGATGATGTCAGGCATGGATCATAGTAGTATGGATATGTCAGGTATGGACATGT
CAGATATGGATCACAGCGGCATGGATATGTCAGGTATGGACATGTCAGATATGGATCACAGCGGCATGGATATGTCAGAT
ATGGACATGTCGGATATGGATCATAGCGGTATGGACATGTCTGGTATGGACCATAGCGGTATGGATATGTCAGGTATGGA
CCATAGCGGTATGGATATGTCAGGTATGGACCATAGCGGTATGGATATGTCAGGTATGGATCACAGTGGTATGGATATGT
CAGGCATGGATCATGGCAGTATGGACATGTCAGGTATGCAAGGTGGTAAAGCGCCAGCTGATGCGCGCAGTCCTGACTAT
TCAAACGGCGTTCCTTATGGACAGTATGGTAAGCCTATGATGATGGGTGATATGCCATTATGGGGCGTTTCTGTAGATGA
TTTAGGTTATCAGTTTGATGACGATCAGATTAATTATGAAGTTGGTGCTTGGTATGGCGTAGATGAGCGTCGCCTCTCTT
TACGCAGCGAAGGTAGTATTCAGACCGAAGGTGATAAAGAAATTGATAGTCTGACCTCACTATCTTACTGGAAGCCGCTA
AGTATCTTCTGGAATGGCGAGGCCGGTGTTGCTTATGATACCGAAAATGATAAACCTGCCATTATGGCGGGTATTGTCGG
TACTATGCCTTACTTTATTGAAACCGATGCCAGAGCTTATCTGTATTCTGATGGACAAGTTCGATTGGACCTTGGCGCAG
AATACGAGTGGCGTTTGAGCCAGCACTGGGTTGTGATACCGGAAGTAGGACTAACAGCCTTTAGTAAAGAAGACAGCGAC
AATCATATTACCAAAGGTTTCAACGAGATGGATGCTGAAGTGAGGCTCACTTATGAGACATTCAGTCGCCAACTTGCGCC
TTATGTGGGTATGAGTTATGAGACAGCGCTTGGTAGTGCTCGAGATCAGCGTCGTCAACATAATGAATCAGTTGATAGCA
GTAGTTTGACTGCGGGGGTTAAATTCTGGTTCTAA

Upstream 100 bases:

>100_bases
TGGGCATGGCATTGTCATCTGCTCTATCACATGGAAGCCGGTATGTTTAGAGAAGTGGCAGTCATTTAAGCAAATCTTTG
ATTGATAGGTGAGAGATGAG

Downstream 100 bases:

>100_bases
TATTATTAATATAATAGGAGATATACTATGAATGCTTCAGATCAAAACAACATGAATCATCAACAGGGCATGAACCCTTA
TATCAAGTTCAACCTGATGA

Product: putative copper-resistance protein CopB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MKIHKVGLRFAGASSLVLLASSFANAADPSTAKKDMMMSGMDHSSMDMSGMDMSDMDHSGMDMSGMDMSDMDHSGMDMSD
MDMSDMDHSGMDMSGMDHSGMDMSGMDHSGMDMSGMDHSGMDMSGMDHSGMDMSGMDHGSMDMSGMQGGKAPADARSPDY
SNGVPYGQYGKPMMMGDMPLWGVSVDDLGYQFDDDQINYEVGAWYGVDERRLSLRSEGSIQTEGDKEIDSLTSLSYWKPL
SIFWNGEAGVAYDTENDKPAIMAGIVGTMPYFIETDARAYLYSDGQVRLDLGAEYEWRLSQHWVVIPEVGLTAFSKEDSD
NHITKGFNEMDAEVRLTYETFSRQLAPYVGMSYETALGSARDQRRQHNESVDSSSLTAGVKFWF

Sequences:

>Translated_384_residues
MKIHKVGLRFAGASSLVLLASSFANAADPSTAKKDMMMSGMDHSSMDMSGMDMSDMDHSGMDMSGMDMSDMDHSGMDMSD
MDMSDMDHSGMDMSGMDHSGMDMSGMDHSGMDMSGMDHSGMDMSGMDHSGMDMSGMDHGSMDMSGMQGGKAPADARSPDY
SNGVPYGQYGKPMMMGDMPLWGVSVDDLGYQFDDDQINYEVGAWYGVDERRLSLRSEGSIQTEGDKEIDSLTSLSYWKPL
SIFWNGEAGVAYDTENDKPAIMAGIVGTMPYFIETDARAYLYSDGQVRLDLGAEYEWRLSQHWVVIPEVGLTAFSKEDSD
NHITKGFNEMDAEVRLTYETFSRQLAPYVGMSYETALGSARDQRRQHNESVDSSSLTAGVKFWF
>Mature_384_residues
MKIHKVGLRFAGASSLVLLASSFANAADPSTAKKDMMMSGMDHSSMDMSGMDMSDMDHSGMDMSGMDMSDMDHSGMDMSD
MDMSDMDHSGMDMSGMDHSGMDMSGMDHSGMDMSGMDHSGMDMSGMDHSGMDMSGMDHGSMDMSGMQGGKAPADARSPDY
SNGVPYGQYGKPMMMGDMPLWGVSVDDLGYQFDDDQINYEVGAWYGVDERRLSLRSEGSIQTEGDKEIDSLTSLSYWKPL
SIFWNGEAGVAYDTENDKPAIMAGIVGTMPYFIETDARAYLYSDGQVRLDLGAEYEWRLSQHWVVIPEVGLTAFSKEDSD
NHITKGFNEMDAEVRLTYETFSRQLAPYVGMSYETALGSARDQRRQHNESVDSSSLTAGVKFWF

Specific function: Exact function not known. Possibly mediates copper resistance by its sequestration in the outer membrane [H]

COG id: COG3667

COG function: function code P; Uncharacterized protein involved in copper resistance

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI310128585, Length=147, Percent_Identity=28.5714285714286, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI310117715, Length=114, Percent_Identity=33.3333333333333, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI310117727, Length=124, Percent_Identity=29.0322580645161, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI310133411, Length=109, Percent_Identity=35.7798165137615, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI310117807, Length=107, Percent_Identity=28.9719626168224, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI310117749, Length=126, Percent_Identity=26.984126984127, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI310113983, Length=128, Percent_Identity=25.78125, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI310127811, Length=114, Percent_Identity=30.7017543859649, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI310133354, Length=108, Percent_Identity=35.1851851851852, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI310120472, Length=99, Percent_Identity=34.3434343434343, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI310117696, Length=125, Percent_Identity=27.2, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI310118047, Length=114, Percent_Identity=30.7017543859649, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI310127668, Length=111, Percent_Identity=30.6306306306306, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI310117988, Length=151, Percent_Identity=29.8013245033113, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI310117767, Length=109, Percent_Identity=28.4403669724771, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI310118035, Length=123, Percent_Identity=26.8292682926829, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI310117682, Length=114, Percent_Identity=31.5789473684211, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI310117858, Length=113, Percent_Identity=27.4336283185841, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI310117978, Length=133, Percent_Identity=24.812030075188, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI310114609, Length=128, Percent_Identity=26.5625, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI310117992, Length=147, Percent_Identity=26.530612244898, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI310117870, Length=109, Percent_Identity=27.5229357798165, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI310117739, Length=137, Percent_Identity=27.007299270073, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI310117876, Length=107, Percent_Identity=27.1028037383178, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI310117803, Length=109, Percent_Identity=30.2752293577982, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI310113981, Length=107, Percent_Identity=22.4299065420561, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI310117902, Length=123, Percent_Identity=29.2682926829268, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI310125400, Length=139, Percent_Identity=26.6187050359712, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI310117827, Length=140, Percent_Identity=25.7142857142857, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI310115582, Length=131, Percent_Identity=28.2442748091603, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI310120476, Length=124, Percent_Identity=26.6129032258064, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI310117779, Length=131, Percent_Identity=24.4274809160305, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI310117925, Length=111, Percent_Identity=28.8288288288288, Blast_Score=69, Evalue=9e-12,
Organism=Homo sapiens, GI310117915, Length=102, Percent_Identity=30.3921568627451, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI310117928, Length=122, Percent_Identity=25.4098360655738, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI310117934, Length=121, Percent_Identity=27.2727272727273, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI310117781, Length=149, Percent_Identity=22.8187919463087, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI310117813, Length=107, Percent_Identity=28.9719626168224, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI310117896, Length=114, Percent_Identity=28.0701754385965, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI310117735, Length=112, Percent_Identity=31.25, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI310117823, Length=109, Percent_Identity=26.605504587156, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI310118037, Length=107, Percent_Identity=31.7757009345794, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI310117970, Length=117, Percent_Identity=30.7692307692308, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI310117717, Length=106, Percent_Identity=27.3584905660377, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI310117680, Length=128, Percent_Identity=25.78125, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI310133352, Length=115, Percent_Identity=26.9565217391304, Blast_Score=66, Evalue=5e-11,
Organism=Homo sapiens, GI310120480, Length=95, Percent_Identity=27.3684210526316, Blast_Score=66, Evalue=7e-11,
Organism=Homo sapiens, GI310124584, Length=114, Percent_Identity=27.1929824561404, Blast_Score=66, Evalue=7e-11,
Organism=Homo sapiens, GI310117795, Length=105, Percent_Identity=27.6190476190476, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI310117904, Length=138, Percent_Identity=26.8115942028986, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI310117846, Length=107, Percent_Identity=30.8411214953271, Blast_Score=65, Evalue=9e-11,
Organism=Homo sapiens, GI310117769, Length=128, Percent_Identity=26.5625, Blast_Score=65, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007939 [H]

Pfam domain/function: PF05275 CopB [H]

EC number: NA

Molecular weight: Translated: 42272; Mature: 42272

Theoretical pI: Translated: 4.11; Mature: 4.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
12.0 %Met     (Translated Protein)
12.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
12.0 %Met     (Mature Protein)
12.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIHKVGLRFAGASSLVLLASSFANAADPSTAKKDMMMSGMDHSSMDMSGMDMSDMDHSG
CCEEEEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
MDMSGMDMSDMDHSGMDMSDMDMSDMDHSGMDMSGMDHSGMDMSGMDHSGMDMSGMDHSG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
MDMSGMDHSGMDMSGMDHGSMDMSGMQGGKAPADARSPDYSNGVPYGQYGKPMMMGDMPL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCE
WGVSVDDLGYQFDDDQINYEVGAWYGVDERRLSLRSEGSIQTEGDKEIDSLTSLSYWKPL
ECCCHHHCCCEECCCCEEEEEEEEECCCHHHHHHCCCCCEECCCCHHHHHHHHHCCCCCE
SIFWNGEAGVAYDTENDKPAIMAGIVGTMPYFIETDARAYLYSDGQVRLDLGAEYEWRLS
EEEECCCCCEEECCCCCCCEEEEHHHHCCCEEEECCCEEEEEECCEEEEEECCCEEEEEC
QHWVVIPEVGLTAFSKEDSDNHITKGFNEMDAEVRLTYETFSRQLAPYVGMSYETALGSA
CCEEEEECCCCEEECCCCCCCHHHCCCCCCCCEEEEEHHHHHHHHHHHHCCCHHHHHHHH
RDQRRQHNESVDSSSLTAGVKFWF
HHHHHHHHCCCCCCCCCCCEEECC
>Mature Secondary Structure
MKIHKVGLRFAGASSLVLLASSFANAADPSTAKKDMMMSGMDHSSMDMSGMDMSDMDHSG
CCEEEEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
MDMSGMDMSDMDHSGMDMSDMDMSDMDHSGMDMSGMDHSGMDMSGMDHSGMDMSGMDHSG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
MDMSGMDHSGMDMSGMDHGSMDMSGMQGGKAPADARSPDYSNGVPYGQYGKPMMMGDMPL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCE
WGVSVDDLGYQFDDDQINYEVGAWYGVDERRLSLRSEGSIQTEGDKEIDSLTSLSYWKPL
ECCCHHHCCCEECCCCEEEEEEEEECCCHHHHHHCCCCCEECCCCHHHHHHHHHCCCCCE
SIFWNGEAGVAYDTENDKPAIMAGIVGTMPYFIETDARAYLYSDGQVRLDLGAEYEWRLS
EEEECCCCCEEECCCCCCCEEEEHHHHCCCEEEECCCEEEEEECCEEEEEECCCEEEEEC
QHWVVIPEVGLTAFSKEDSDNHITKGFNEMDAEVRLTYETFSRQLAPYVGMSYETALGSA
CCEEEEECCCCEEECCCCCCCHHHCCCCCCCCEEEEEHHHHHHHHHHHHCCCHHHHHHHH
RDQRRQHNESVDSSSLTAGVKFWF
HHHHHHHHCCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3372485; 1924351 [H]