Click here to switch to the map view.

The map label for this gene is yjbJ [H]

Identifier: 93004997

GI number: 93004997

Start: 195015

End: 195218

Strand: Reverse

Name: yjbJ [H]

Synonym: Pcryo_0166

Alternate gene names: 93004997

Gene position: 195218-195015 (Counterclockwise)

Preceding gene: 93004999

Following gene: 93004996

Centisome position: 6.38

GC content: 41.18

Gene sequence:

>204_bases
ATGAATGAACATACTCTAAAAGGCGAGTGGAACCAAGTAAAAGGCTCAGCAAAGCAGAAATGGGCTGACCTTACTGATGA
CGATTTATTACATGTTGAAGGTAGCCGTGATAAGCTCGTTGGTAAAGTACAAGAGCGTTATGGTCATAGTAAAGACGATG
CTGAGCGTGAAGTAGATGCATGGCGTACTGAAAATAAATACTAG

Upstream 100 bases:

>100_bases
AATAATAATTTGAATACTACAGCGTGATGCAACCTGTTGATTTAACTTTTAAATAACAGCTACTGCAAAAGACGCAATAA
CTAAAACAAGGAAAATAGCA

Downstream 100 bases:

>100_bases
TAAATAGTGCTGCTTGTAACAAGAGTTAAGATAAAATTTTTGTAGGCAGATTATTTAAACGAAAACCGCATTAGAAACTA
ATGCGGTTTTTTTATGCTCA

Product: CsbD-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 67

Protein sequence:

>67_residues
MNEHTLKGEWNQVKGSAKQKWADLTDDDLLHVEGSRDKLVGKVQERYGHSKDDAEREVDAWRTENKY

Sequences:

>Translated_67_residues
MNEHTLKGEWNQVKGSAKQKWADLTDDDLLHVEGSRDKLVGKVQERYGHSKDDAEREVDAWRTENKY
>Mature_67_residues
MNEHTLKGEWNQVKGSAKQKWADLTDDDLLHVEGSRDKLVGKVQERYGHSKDDAEREVDAWRTENKY

Specific function: Unknown

COG id: COG3237

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0337 (CsbD) family [H]

Homologues:

Organism=Escherichia coli, GI1790479, Length=67, Percent_Identity=55.2238805970149, Blast_Score=80, Evalue=3e-17,

Paralogues:

None

Copy number: 12620 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). 60 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). 440 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008462 [H]

Pfam domain/function: PF05532 CsbD [H]

EC number: NA

Molecular weight: Translated: 7843; Mature: 7843

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEHTLKGEWNQVKGSAKQKWADLTDDDLLHVEGSRDKLVGKVQERYGHSKDDAEREVDA
CCCCCCCCCCHHHCCCHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHH
WRTENKY
HHCCCCC
>Mature Secondary Structure
MNEHTLKGEWNQVKGSAKQKWADLTDDDLLHVEGSRDKLVGKVQERYGHSKDDAEREVDA
CCCCCCCCCCHHHCCCHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHH
WRTENKY
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]