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The map label for this gene is mmgC [H]

Identifier: 93004979

GI number: 93004979

Start: 174403

End: 176223

Strand: Reverse

Name: mmgC [H]

Synonym: Pcryo_0148

Alternate gene names: 93004979

Gene position: 176223-174403 (Counterclockwise)

Preceding gene: 93004981

Following gene: 93004976

Centisome position: 5.76

GC content: 43.6

Gene sequence:

>1821_bases
ATGTTAACTTACAAAGCACCTTTACGTGATATCAAGTTTTTAATTAATGATGTATTTGACTACCAAACGCATTATAAAGA
TTTGGATAATGGCGAAAATGCAGATCCTGAAACCGTTGATATGATTCTTCAAGGGATGGCAGATTTTGCTGAAAACGTTT
TGGCACCTTTATATCAGCCAGCGGATGAAGAAGGTTGTCATTTTGAGAATGGTGTGGTGACTACGCCTAAAGGCTTTAAA
GAAGCATATCAGCAGTTTGTTGATGGTGGCTGGCAAGGTATTTCTTACCCTGAAGAATATGGCGGTATGAACTTACCGAC
CTCATTGAACCTTATCAAAGCTGAAATGATCGGTACGGCTAACTGGCCTTGGGCAATGTATCCTGGTTTATCAACCGGCT
GTATCAATACCATTATGCAGTATGGTACGGATGAGCAAAAAGAGACGTATCTACATAAATTGGTCGAAGGCTCTTGGGCA
GGCACTATGTGTCTAACTGAGCCACAATGTGGTACAGACTTGGGTCAAGTAAAGTCAAAAGCTATTCCACAAGACGACGC
CAGCTATAAGCTTAGCGGTACTAAGATCTTCATCTCAAGTGGCGAGCATGACTTAACTGAAAACATTATTCATATCGTTT
TAGCCCGTCTACCGGATGCACCAGAAGGCACCCGCGGTATTTCATTGTTTATCGTACCGAAATTTTTGCCAAATGCTGAA
GGCGAAATTGGCGAGCGCAATGGCGTCTCTTGTGGATCTATTGAACACAAAATGGGCATCAGCTCATCAGCGACTTGTGT
CCTAAACTTTGATGATGCCGTTGGTTACTTAATTGGTGAGCCGAACAAAGGTCTAAAAGCCATGTTCACCTTTATGAACA
CTGCCCGTATTGGTACTGGTATCCAAGGTCTGGCGCACACTGAATTGTCATTCCAAAACGCCCTACCATATGCCAAAGAT
CGTCGTTCAATGCGTACTTTATCAGGCACGAAAGATCCTGAAAAAGTTGCTGATGCGATTATTCATCATGCTGACGTACG
CCGTATGCTATTGACCCAAAAAGCTTTTGCTGAAGGCGGTCGCTCAATGATTTATCATTCAGCACGCTATGCAGATAAAA
TGGCACAAGGCATCATCAATGGCGATGATGAGGAGTTTGAAAAATGGGATGATAAGCTTGGCTTCTATACGCCTATCCTA
AAAGGCTTCTTGACTGAGCTAGGTATTGAAGCAGCCAAACACGGTCAGCAAGTCTATGGCGGTCATGGCTATATCAAAGA
ATGGGGTATGGAGCTGATCGCTCGTGATGCTCGTATCGCGACTATGTACGAAGGTACGACTGGTATCCAAGCATTGGATC
TATTAGGTCGTAAAGTTATCTTGCAGTCTAAAGGTAAAATCATTCGCGATTACACTTCAAGCATCATGAAATGGTGTGGC
GAGTATGCCTTAGACAAAGACATGCGCAAGTTTGTTTGGGCATTGACTAAGCTGTGTGCTGAATGGAACACTCTGACAGT
ACGCTTGATGTTGATGGCACGTAAAGACCGTGAAATCATCTCAGCAGCATCTGATGATTTCTTAATGTACTCAGGCTATG
TGATGATGGGCTACCACTGGGCACGTATGGCAGCGGTTGCGTATGACAAGCTTGAAAATGGCGGTACAGAATCACCAGAG
TTTTACAAAGCCAAAATCCAAACGGCAGAATTCTATTTTGATAAGCTGTTACCACGTACTTCAGGTCACGCCGAAGGCAT
GGTTGCACCAAGCAGCAGCATGACAGCAATGGACATTGATAACTTTGCTTTCTTAGACTAG

Upstream 100 bases:

>100_bases
TTCTCTGTTTTTATTCCAAATAATTAAAATCGTTTCCATAAACTCTGGCTTAAAAACTAAGTCAACCGTCTATGATAGCG
AACAACTAAAGAGAACGACT

Downstream 100 bases:

>100_bases
AATTGATTAAAAGCTAGTCTAAGACTGTTATAAATAAAAAAGCGCTTAGTTAAATAACTAGGCGCTTTTTTATACTGTAT
TAGCAAGTAACTAATAAATT

Product: acyl-CoA dehydrogenase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 606; Mature: 606

Protein sequence:

>606_residues
MLTYKAPLRDIKFLINDVFDYQTHYKDLDNGENADPETVDMILQGMADFAENVLAPLYQPADEEGCHFENGVVTTPKGFK
EAYQQFVDGGWQGISYPEEYGGMNLPTSLNLIKAEMIGTANWPWAMYPGLSTGCINTIMQYGTDEQKETYLHKLVEGSWA
GTMCLTEPQCGTDLGQVKSKAIPQDDASYKLSGTKIFISSGEHDLTENIIHIVLARLPDAPEGTRGISLFIVPKFLPNAE
GEIGERNGVSCGSIEHKMGISSSATCVLNFDDAVGYLIGEPNKGLKAMFTFMNTARIGTGIQGLAHTELSFQNALPYAKD
RRSMRTLSGTKDPEKVADAIIHHADVRRMLLTQKAFAEGGRSMIYHSARYADKMAQGIINGDDEEFEKWDDKLGFYTPIL
KGFLTELGIEAAKHGQQVYGGHGYIKEWGMELIARDARIATMYEGTTGIQALDLLGRKVILQSKGKIIRDYTSSIMKWCG
EYALDKDMRKFVWALTKLCAEWNTLTVRLMLMARKDREIISAASDDFLMYSGYVMMGYHWARMAAVAYDKLENGGTESPE
FYKAKIQTAEFYFDKLLPRTSGHAEGMVAPSSSMTAMDIDNFAFLD

Sequences:

>Translated_606_residues
MLTYKAPLRDIKFLINDVFDYQTHYKDLDNGENADPETVDMILQGMADFAENVLAPLYQPADEEGCHFENGVVTTPKGFK
EAYQQFVDGGWQGISYPEEYGGMNLPTSLNLIKAEMIGTANWPWAMYPGLSTGCINTIMQYGTDEQKETYLHKLVEGSWA
GTMCLTEPQCGTDLGQVKSKAIPQDDASYKLSGTKIFISSGEHDLTENIIHIVLARLPDAPEGTRGISLFIVPKFLPNAE
GEIGERNGVSCGSIEHKMGISSSATCVLNFDDAVGYLIGEPNKGLKAMFTFMNTARIGTGIQGLAHTELSFQNALPYAKD
RRSMRTLSGTKDPEKVADAIIHHADVRRMLLTQKAFAEGGRSMIYHSARYADKMAQGIINGDDEEFEKWDDKLGFYTPIL
KGFLTELGIEAAKHGQQVYGGHGYIKEWGMELIARDARIATMYEGTTGIQALDLLGRKVILQSKGKIIRDYTSSIMKWCG
EYALDKDMRKFVWALTKLCAEWNTLTVRLMLMARKDREIISAASDDFLMYSGYVMMGYHWARMAAVAYDKLENGGTESPE
FYKAKIQTAEFYFDKLLPRTSGHAEGMVAPSSSMTAMDIDNFAFLD
>Mature_606_residues
MLTYKAPLRDIKFLINDVFDYQTHYKDLDNGENADPETVDMILQGMADFAENVLAPLYQPADEEGCHFENGVVTTPKGFK
EAYQQFVDGGWQGISYPEEYGGMNLPTSLNLIKAEMIGTANWPWAMYPGLSTGCINTIMQYGTDEQKETYLHKLVEGSWA
GTMCLTEPQCGTDLGQVKSKAIPQDDASYKLSGTKIFISSGEHDLTENIIHIVLARLPDAPEGTRGISLFIVPKFLPNAE
GEIGERNGVSCGSIEHKMGISSSATCVLNFDDAVGYLIGEPNKGLKAMFTFMNTARIGTGIQGLAHTELSFQNALPYAKD
RRSMRTLSGTKDPEKVADAIIHHADVRRMLLTQKAFAEGGRSMIYHSARYADKMAQGIINGDDEEFEKWDDKLGFYTPIL
KGFLTELGIEAAKHGQQVYGGHGYIKEWGMELIARDARIATMYEGTTGIQALDLLGRKVILQSKGKIIRDYTSSIMKWCG
EYALDKDMRKFVWALTKLCAEWNTLTVRLMLMARKDREIISAASDDFLMYSGYVMMGYHWARMAAVAYDKLENGGTESPE
FYKAKIQTAEFYFDKLLPRTSGHAEGMVAPSSSMTAMDIDNFAFLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4501859, Length=416, Percent_Identity=28.3653846153846, Blast_Score=122, Evalue=1e-27,
Organism=Homo sapiens, GI226958412, Length=435, Percent_Identity=26.2068965517241, Blast_Score=117, Evalue=5e-26,
Organism=Homo sapiens, GI4557233, Length=444, Percent_Identity=27.7027027027027, Blast_Score=113, Evalue=4e-25,
Organism=Homo sapiens, GI226958414, Length=383, Percent_Identity=26.1096605744125, Blast_Score=106, Evalue=8e-23,
Organism=Homo sapiens, GI21361497, Length=379, Percent_Identity=26.3852242744063, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI76496475, Length=423, Percent_Identity=27.8959810874704, Blast_Score=103, Evalue=6e-22,
Organism=Homo sapiens, GI4557235, Length=423, Percent_Identity=27.8959810874704, Blast_Score=102, Evalue=8e-22,
Organism=Homo sapiens, GI4501857, Length=391, Percent_Identity=22.7621483375959, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI4557231, Length=366, Percent_Identity=27.8688524590164, Blast_Score=89, Evalue=2e-17,
Organism=Homo sapiens, GI187960098, Length=366, Percent_Identity=27.8688524590164, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI7656849, Length=386, Percent_Identity=25.3886010362694, Blast_Score=79, Evalue=9e-15,
Organism=Escherichia coli, GI87082384, Length=293, Percent_Identity=26.2798634812287, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI87081958, Length=404, Percent_Identity=22.2772277227723, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17508101, Length=422, Percent_Identity=26.7772511848341, Blast_Score=125, Evalue=7e-29,
Organism=Caenorhabditis elegans, GI17506239, Length=407, Percent_Identity=26.044226044226, Blast_Score=114, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17569725, Length=425, Percent_Identity=26.8235294117647, Blast_Score=107, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17534899, Length=423, Percent_Identity=28.3687943262411, Blast_Score=105, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17538396, Length=422, Percent_Identity=26.303317535545, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71990804, Length=286, Percent_Identity=29.7202797202797, Blast_Score=101, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI86563383, Length=364, Percent_Identity=24.4505494505494, Blast_Score=101, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI86563381, Length=364, Percent_Identity=24.4505494505494, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17570075, Length=390, Percent_Identity=24.8717948717949, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI32563615, Length=234, Percent_Identity=29.9145299145299, Blast_Score=90, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI71985184, Length=376, Percent_Identity=26.3297872340426, Blast_Score=89, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI71985192, Length=222, Percent_Identity=30.6306306306306, Blast_Score=76, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17533517, Length=381, Percent_Identity=23.8845144356955, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24666513, Length=415, Percent_Identity=26.7469879518072, Blast_Score=120, Evalue=3e-27,
Organism=Drosophila melanogaster, GI21356377, Length=447, Percent_Identity=26.1744966442953, Blast_Score=107, Evalue=3e-23,
Organism=Drosophila melanogaster, GI24646207, Length=442, Percent_Identity=24.8868778280543, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI281363737, Length=372, Percent_Identity=25.2688172043011, Blast_Score=95, Evalue=2e-19,
Organism=Drosophila melanogaster, GI21355753, Length=427, Percent_Identity=25.7611241217799, Blast_Score=87, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 67462; Mature: 67462

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTYKAPLRDIKFLINDVFDYQTHYKDLDNGENADPETVDMILQGMADFAENVLAPLYQP
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
ADEEGCHFENGVVTTPKGFKEAYQQFVDGGWQGISYPEEYGGMNLPTSLNLIKAEMIGTA
CCCCCCCCCCCEEECCHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHCCC
NWPWAMYPGLSTGCINTIMQYGTDEQKETYLHKLVEGSWAGTMCLTEPQCGTDLGQVKSK
CCCCEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHH
AIPQDDASYKLSGTKIFISSGEHDLTENIIHIVLARLPDAPEGTRGISLFIVPKFLPNAE
CCCCCCCCEEECCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCC
GEIGERNGVSCGSIEHKMGISSSATCVLNFDDAVGYLIGEPNKGLKAMFTFMNTARIGTG
CCCCCCCCCCCCCCHHHCCCCCCCEEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHCCC
IQGLAHTELSFQNALPYAKDRRSMRTLSGTKDPEKVADAIIHHADVRRMLLTQKAFAEGG
CCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RSMIYHSARYADKMAQGIINGDDEEFEKWDDKLGFYTPILKGFLTELGIEAAKHGQQVYG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEC
GHGYIKEWGMELIARDARIATMYEGTTGIQALDLLGRKVILQSKGKIIRDYTSSIMKWCG
CCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
EYALDKDMRKFVWALTKLCAEWNTLTVRLMLMARKDREIISAASDDFLMYSGYVMMGYHW
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHH
ARMAAVAYDKLENGGTESPEFYKAKIQTAEFYFDKLLPRTSGHAEGMVAPSSSMTAMDID
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCEEEECC
NFAFLD
CCCCCC
>Mature Secondary Structure
MLTYKAPLRDIKFLINDVFDYQTHYKDLDNGENADPETVDMILQGMADFAENVLAPLYQP
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
ADEEGCHFENGVVTTPKGFKEAYQQFVDGGWQGISYPEEYGGMNLPTSLNLIKAEMIGTA
CCCCCCCCCCCEEECCHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHCCC
NWPWAMYPGLSTGCINTIMQYGTDEQKETYLHKLVEGSWAGTMCLTEPQCGTDLGQVKSK
CCCCEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHH
AIPQDDASYKLSGTKIFISSGEHDLTENIIHIVLARLPDAPEGTRGISLFIVPKFLPNAE
CCCCCCCCEEECCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCC
GEIGERNGVSCGSIEHKMGISSSATCVLNFDDAVGYLIGEPNKGLKAMFTFMNTARIGTG
CCCCCCCCCCCCCCHHHCCCCCCCEEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHCCC
IQGLAHTELSFQNALPYAKDRRSMRTLSGTKDPEKVADAIIHHADVRRMLLTQKAFAEGG
CCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RSMIYHSARYADKMAQGIINGDDEEFEKWDDKLGFYTPILKGFLTELGIEAAKHGQQVYG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEC
GHGYIKEWGMELIARDARIATMYEGTTGIQALDLLGRKVILQSKGKIIRDYTSSIMKWCG
CCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
EYALDKDMRKFVWALTKLCAEWNTLTVRLMLMARKDREIISAASDDFLMYSGYVMMGYHW
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHH
ARMAAVAYDKLENGGTESPEFYKAKIQTAEFYFDKLLPRTSGHAEGMVAPSSSMTAMDID
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCEEEECC
NFAFLD
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8759838; 8969508; 9384377 [H]