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The map label for this gene is rlpA [C]

Identifier: 93004877

GI number: 93004877

Start: 55148

End: 55510

Strand: Reverse

Name: rlpA [C]

Synonym: Pcryo_0046

Alternate gene names: 93004877

Gene position: 55510-55148 (Counterclockwise)

Preceding gene: 93004880

Following gene: 93004875

Centisome position: 1.81

GC content: 42.15

Gene sequence:

>363_bases
ATGTCTTATTTAATCAAGTCTTTAGTCATCACTTTATCAATACTATTGAGCGCCACTGCTTTCGCCGGTAATACCAGCTA
CTACGGTAGCAAGTTCCACGGTAAGCGCACGGCAAGTGGTAGTATCTTCAATATGAACTCCCTGACAGCCGCACATAGAA
CGCTGCCGTTTGGTACGAAGGTACAAGTGACCAACAAAAAGACAAAGCAGAGTGTGATTGTGAAAATTACAGATAGAGGA
CCTTTTATACGAGGTCGCATCCTTGATTTATCTAAAGCTGCTGCTGGTCAAATAAACTGTCAGCTTTGTACTACTACGAT
GGAAATCCTATCTTATGGTGATGGTCGATATCGTAGAGAGTAA

Upstream 100 bases:

>100_bases
TATTTCTTGTATGATGTTTTATATTATTTGTACTCATAGGGAGTATGCATAACATAGGCAAGAGTATCTGTCTATTTCTT
CAATAGCCAAAAGGTTTTAA

Downstream 100 bases:

>100_bases
GGCAATAAAGTAAAAAAAGGGAAGGCGTAAGCCTTCCCTTTTTTAATGACTGAGTTTTATCGCTTGGTTTCGATTAACAA
CTAATTGATAAAAACCTCAC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 119

Protein sequence:

>120_residues
MSYLIKSLVITLSILLSATAFAGNTSYYGSKFHGKRTASGSIFNMNSLTAAHRTLPFGTKVQVTNKKTKQSVIVKITDRG
PFIRGRILDLSKAAAGQINCQLCTTTMEILSYGDGRYRRE

Sequences:

>Translated_120_residues
MSYLIKSLVITLSILLSATAFAGNTSYYGSKFHGKRTASGSIFNMNSLTAAHRTLPFGTKVQVTNKKTKQSVIVKITDRG
PFIRGRILDLSKAAAGQINCQLCTTTMEILSYGDGRYRRE
>Mature_119_residues
SYLIKSLVITLSILLSATAFAGNTSYYGSKFHGKRTASGSIFNMNSLTAAHRTLPFGTKVQVTNKKTKQSVIVKITDRGP
FIRGRILDLSKAAAGQINCQLCTTTMEILSYGDGRYRRE

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=78, Percent_Identity=39.7435897435897, Blast_Score=62, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 13169; Mature: 13038

Theoretical pI: Translated: 10.83; Mature: 10.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYLIKSLVITLSILLSATAFAGNTSYYGSKFHGKRTASGSIFNMNSLTAAHRTLPFGTK
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHCCCCCCE
VQVTNKKTKQSVIVKITDRGPFIRGRILDLSKAAAGQINCQLCTTTMEILSYGDGRYRRE
EEECCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SYLIKSLVITLSILLSATAFAGNTSYYGSKFHGKRTASGSIFNMNSLTAAHRTLPFGTK
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHCCCCCCE
VQVTNKKTKQSVIVKITDRGPFIRGRILDLSKAAAGQINCQLCTTTMEILSYGDGRYRRE
EEECCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]