Click here to switch to the map view.

The map label for this gene is oxyR [H]

Identifier: 92115359

GI number: 92115359

Start: 3617057

End: 3617977

Strand: Direct

Name: oxyR [H]

Synonym: Csal_3244

Alternate gene names: 92115359

Gene position: 3617057-3617977 (Clockwise)

Preceding gene: 92115356

Following gene: 92115360

Centisome position: 97.85

GC content: 63.95

Gene sequence:

>921_bases
ATGACTCTAACAGAACTCCGTTATATCGTAACCTTGGCCCAGGAGCGCCACTTCGGACGCGCCGCCGAGCGCTGCTACGT
GTCGCAGCCCACGCTGTCGGTCGCCGTGAAGAAGCTGGAAGAAGAGCTGGGCATCGCGCTGTTCGAACGCTCCAAGTCCA
CCGTACAGGTCACGCCGCTGGGCGAGAAGATCGTCGAGCAGTCCCAACGCGTGCTGGAACAGGCCAGCCTCATCAGGGAG
ATGGCCACCGAAGGCAAGGACCAGCTGGCGAGTCCGCTGCGCATCGGCGCGATCTACACCATCGGGCCTTACCTGTTCCC
GCACTTGATCCCCGAGCTGTCGCGTCATGCTCCGCAGATGCCACTGTACATCGAAGAGGGCTTCACCGGGGAACTTCGTC
GCAAACTGCGCAGCGGCGAACTCGACGCCATCATCGTCGCCCTGCCGTTCAACGAGCCGGACGTGCTGACCAAGGCGATT
TACGAAGAGCCGTTCGAGGTGCTGATACCCACGGGGCACCCCTGGGCCCAGCGTGACGCCATCGCCAAGGAAGACCTGCT
CACGGAACGGCTGTTGCTGCTGGGCGAGGGACACTGCTTCCGCGACCAGATTCTCGAGGCATGCCCGGCCATCAGCAACC
AGCTCAACAATCCCAGCAACACCCTGATCGCCGAGGGCGGCTCGCTGGAAACCATTCGCCACATGGTGGCATCCGGGCTG
GGCATCACGGTATTGCCCAAGTCGGCCATCGGTACCGGGCACTACGAGTCGGGGCTGCTCGAGAGCCGGCCATTCGCCAA
TAGCGTACCGAGTCGCACGGTGGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCCAAGGCCATCGATGCCCTGACCGCGG
CCATCGACGCATGCCAGCAGCAAAGCATCCAGGCGGCATGA

Upstream 100 bases:

>100_bases
CCTAGCCCCTTGGTAAAAAGTCCCTTGGTAAAAAGTCCCTGACACCGAGTACCTTAGTGAACCCATTGCGCCGCTCAGGA
GGCCCGAACAGGCCCAGATC

Downstream 100 bases:

>100_bases
GCACCGAGACTCAGGCACTGGACGCACCGGTCGGCGAACTCTCCGGGGTGGGCGAGGCATTGACAGCCAAGCTCGCCCGG
CTGGGTATCGTCAGTATCGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MTLTELRYIVTLAQERHFGRAAERCYVSQPTLSVAVKKLEEELGIALFERSKSTVQVTPLGEKIVEQSQRVLEQASLIRE
MATEGKDQLASPLRIGAIYTIGPYLFPHLIPELSRHAPQMPLYIEEGFTGELRRKLRSGELDAIIVALPFNEPDVLTKAI
YEEPFEVLIPTGHPWAQRDAIAKEDLLTERLLLLGEGHCFRDQILEACPAISNQLNNPSNTLIAEGGSLETIRHMVASGL
GITVLPKSAIGTGHYESGLLESRPFANSVPSRTVAIAWRASFPRPKAIDALTAAIDACQQQSIQAA

Sequences:

>Translated_306_residues
MTLTELRYIVTLAQERHFGRAAERCYVSQPTLSVAVKKLEEELGIALFERSKSTVQVTPLGEKIVEQSQRVLEQASLIRE
MATEGKDQLASPLRIGAIYTIGPYLFPHLIPELSRHAPQMPLYIEEGFTGELRRKLRSGELDAIIVALPFNEPDVLTKAI
YEEPFEVLIPTGHPWAQRDAIAKEDLLTERLLLLGEGHCFRDQILEACPAISNQLNNPSNTLIAEGGSLETIRHMVASGL
GITVLPKSAIGTGHYESGLLESRPFANSVPSRTVAIAWRASFPRPKAIDALTAAIDACQQQSIQAA
>Mature_305_residues
TLTELRYIVTLAQERHFGRAAERCYVSQPTLSVAVKKLEEELGIALFERSKSTVQVTPLGEKIVEQSQRVLEQASLIREM
ATEGKDQLASPLRIGAIYTIGPYLFPHLIPELSRHAPQMPLYIEEGFTGELRRKLRSGELDAIIVALPFNEPDVLTKAIY
EEPFEVLIPTGHPWAQRDAIAKEDLLTERLLLLGEGHCFRDQILEACPAISNQLNNPSNTLIAEGGSLETIRHMVASGLG
ITVLPKSAIGTGHYESGLLESRPFANSVPSRTVAIAWRASFPRPKAIDALTAAIDACQQQSIQAA

Specific function: Required for the induction of a regulon of hydrogen peroxide inducible genes such as catalase and glutathione- reductase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790399, Length=298, Percent_Identity=38.9261744966443, Blast_Score=211, Evalue=4e-56,
Organism=Escherichia coli, GI1788887, Length=293, Percent_Identity=27.9863481228669, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1788748, Length=252, Percent_Identity=30.5555555555556, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI157672245, Length=301, Percent_Identity=28.5714285714286, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787530, Length=256, Percent_Identity=28.515625, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787879, Length=259, Percent_Identity=29.7297297297297, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI2367136, Length=251, Percent_Identity=28.2868525896414, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1790208, Length=249, Percent_Identity=28.9156626506024, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787601, Length=177, Percent_Identity=28.8135593220339, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787806, Length=282, Percent_Identity=21.2765957446809, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788481, Length=306, Percent_Identity=24.1830065359477, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI145693105, Length=283, Percent_Identity=24.3816254416961, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1788296, Length=237, Percent_Identity=26.5822784810127, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790262, Length=280, Percent_Identity=25, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081904, Length=181, Percent_Identity=27.0718232044199, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87082132, Length=306, Percent_Identity=22.2222222222222, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33684; Mature: 33553

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLTELRYIVTLAQERHFGRAAERCYVSQPTLSVAVKKLEEELGIALFERSKSTVQVTPL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHCCCCCEEEEECC
GEKIVEQSQRVLEQASLIREMATEGKDQLASPLRIGAIYTIGPYLFPHLIPELSRHAPQM
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCC
PLYIEEGFTGELRRKLRSGELDAIIVALPFNEPDVLTKAIYEEPFEVLIPTGHPWAQRDA
CEEEECCCCHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEECCCCCCHHHHH
IAKEDLLTERLLLLGEGHCFRDQILEACPAISNQLNNPSNTLIAEGGSLETIRHMVASGL
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCC
GITVLPKSAIGTGHYESGLLESRPFANSVPSRTVAIAWRASFPRPKAIDALTAAIDACQQ
CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH
QSIQAA
HHCCCC
>Mature Secondary Structure 
TLTELRYIVTLAQERHFGRAAERCYVSQPTLSVAVKKLEEELGIALFERSKSTVQVTPL
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHCCCCCEEEEECC
GEKIVEQSQRVLEQASLIREMATEGKDQLASPLRIGAIYTIGPYLFPHLIPELSRHAPQM
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCC
PLYIEEGFTGELRRKLRSGELDAIIVALPFNEPDVLTKAIYEEPFEVLIPTGHPWAQRDA
CEEEECCCCHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEECCCCCCHHHHH
IAKEDLLTERLLLLGEGHCFRDQILEACPAISNQLNNPSNTLIAEGGSLETIRHMVASGL
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCC
GITVLPKSAIGTGHYESGLLESRPFANSVPSRTVAIAWRASFPRPKAIDALTAAIDACQQ
CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH
QSIQAA
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA