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The map label for this gene is yjgF [C]

Identifier: 92115351

GI number: 92115351

Start: 3606281

End: 3606670

Strand: Direct

Name: yjgF [C]

Synonym: Csal_3236

Alternate gene names: 92115351

Gene position: 3606281-3606670 (Clockwise)

Preceding gene: 92115350

Following gene: 92115353

Centisome position: 97.56

GC content: 62.31

Gene sequence:

>390_bases
ATGAGTAACAAAGCCATGATCAACACCGAGCAGGCCCCGGCCGCCATCGGTCCTTACTCGCAGGCCGTCAAGGCCGGCAA
CACGGTCTATCTCTCCGGCCAGATTCCGCTGGACCCGCACACCATGGAGCTCGTGTCCGAGGACTTCGAAGCCCAGGCAC
GCCAGGTCTTCGACAATCTTCAGGCGGTGTGCCAGGAAGCGGCCGGCTCGCTGCAGGACATCGTCAAGCTCAACCTCTAC
CTCGTCGATCTCGACAACTTCGGCGTGGTCAACAAGGTGATGGAAGAGTACTTCCAGGCACCCTACCCGGCCCGTGCGGC
GGTCGGCGTCAAGCAGCTTCCCAAGGGCAGCCAGGTCGAGGCCGAAGCGGTCATGGTCATCGGTGACTGA

Upstream 100 bases:

>100_bases
GTTTTGGCGATGCTCGGCGCCCCCGCTCATGCGGGTGCGGCGGCGTCGCCGTTTTTGTCCATCGCAACGTGCACTTCGCA
TAACGACAAGGAGCCATGCC

Downstream 100 bases:

>100_bases
ATCCGCCAGCCGCCCTCCGGCGACGCAGGGCGGACCCTCAGGCGCGGGCGGTCTGCGGCAGCTCGCCGCGTAGCTTGCTC
ACGTCCGTGCGGGGCGGCAC

Product: YjgF-like protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MSNKAMINTEQAPAAIGPYSQAVKAGNTVYLSGQIPLDPHTMELVSEDFEAQARQVFDNLQAVCQEAAGSLQDIVKLNLY
LVDLDNFGVVNKVMEEYFQAPYPARAAVGVKQLPKGSQVEAEAVMVIGD

Sequences:

>Translated_129_residues
MSNKAMINTEQAPAAIGPYSQAVKAGNTVYLSGQIPLDPHTMELVSEDFEAQARQVFDNLQAVCQEAAGSLQDIVKLNLY
LVDLDNFGVVNKVMEEYFQAPYPARAAVGVKQLPKGSQVEAEAVMVIGD
>Mature_128_residues
SNKAMINTEQAPAAIGPYSQAVKAGNTVYLSGQIPLDPHTMELVSEDFEAQARQVFDNLQAVCQEAAGSLQDIVKLNLYL
VDLDNFGVVNKVMEEYFQAPYPARAAVGVKQLPKGSQVEAEAVMVIGD

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=125, Percent_Identity=42.4, Blast_Score=114, Evalue=3e-26,
Organism=Escherichia coli, GI87082396, Length=123, Percent_Identity=47.1544715447154, Blast_Score=108, Evalue=8e-26,
Organism=Escherichia coli, GI87082213, Length=126, Percent_Identity=42.0634920634921, Blast_Score=106, Evalue=6e-25,
Organism=Escherichia coli, GI1787245, Length=105, Percent_Identity=27.6190476190476, Blast_Score=65, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71982075, Length=127, Percent_Identity=46.4566929133858, Blast_Score=114, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI25148896, Length=127, Percent_Identity=46.4566929133858, Blast_Score=114, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI71982068, Length=127, Percent_Identity=46.4566929133858, Blast_Score=113, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6322138, Length=120, Percent_Identity=41.6666666666667, Blast_Score=95, Evalue=3e-21,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=38.2352941176471, Blast_Score=78, Evalue=5e-16,
Organism=Drosophila melanogaster, GI19921376, Length=125, Percent_Identity=37.6, Blast_Score=92, Evalue=1e-19,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13931; Mature: 13800

Theoretical pI: Translated: 4.15; Mature: 4.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKAMINTEQAPAAIGPYSQAVKAGNTVYLSGQIPLDPHTMELVSEDFEAQARQVFDNL
CCCCCEEECCCCCCCCCCHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
QAVCQEAAGSLQDIVKLNLYLVDLDNFGVVNKVMEEYFQAPYPARAAVGVKQLPKGSQVE
HHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHCCCCCCHHHCCHHHCCCCCCCC
AEAVMVIGD
EEEEEEECC
>Mature Secondary Structure 
SNKAMINTEQAPAAIGPYSQAVKAGNTVYLSGQIPLDPHTMELVSEDFEAQARQVFDNL
CCCCEEECCCCCCCCCCHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
QAVCQEAAGSLQDIVKLNLYLVDLDNFGVVNKVMEEYFQAPYPARAAVGVKQLPKGSQVE
HHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHCCCCCCHHHCCHHHCCCCCCCC
AEAVMVIGD
EEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2722750 [H]