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The map label for this gene is ygbK [C]

Identifier: 92115332

GI number: 92115332

Start: 3585560

End: 3586888

Strand: Direct

Name: ygbK [C]

Synonym: Csal_3217

Alternate gene names: 92115332

Gene position: 3585560-3586888 (Clockwise)

Preceding gene: 92115331

Following gene: 92115333

Centisome position: 96.99

GC content: 57.64

Gene sequence:

>1329_bases
ATGAAACAACTCTTGGCCGCCTTCTATGGCGATGATTTCACAGGCTCGACGGAAAACTTGGCGCAATTCTGCCGCCATGG
GCTTCGGGGCAGGTTATTCTTCACCAGCAGCAACCGAGAGGCGATTCTTGAGATGGCCTCCGAACTGGACGTAGTGGGGT
TGGCAGGCACAGCTCGTGGCCTGGCTCCCTCGGCAATGACAGAAGAAGTGGACCCTGCTCTAGCCTTGTTAGACACCCTA
AGTCCCCGCCTCAAGCAGTTTAAGGTTTGCTCGACTTTCGATTCCTCGCCCACGGTCGGCAGCATAGGGCATGTCATGGA
TCTAGCCCGACGCCGATGGCCGGAATGTGCTCTTCCCATCTTGCCTGCCACGCCGGCTTTTGGTCGGTACACGGCCTTTT
CCCATCTGTTTACACGTTATGAAAACGAAATATGCCGTCTGGATCAGAACCCTGCGATGGCATATCACCCATCGACCCCA
ATGGGCGAAGCCGACCTACGACGTCACCTCATGGCGCAGACCGCCATCCCTCCGGCAGCAGTCACGTTACTGGATTATCA
ACAGCCTGATGGCGGCTGGCAGTGCTTGGCATCCGCCGTGGAAGAGCAACGCTTCGTGGTTATGGATGCGACACAAGCAG
CCGAGATACACCATGCCGCCAAGCTTATTCTTAAGCTTGCCGAGCGACATCCTACCCTTGCAGTAGCGGCGCAGGGTCTG
GCCGATGCCCTAGGTGGACTGGTTACGCGCGACATGGAACAACGCGAGCCACTGCCCACGACGTATCCTGGAGTGGATAG
GCTACTGGTGCTATCCGGCAGTTGCTCGCCTCAGACCCGTAAGCAACTCGCGCACATGGAAGCGCAAGGCGGCTGCATCG
TGGCAATATCACCCATGGAGGCATTGCGTTCCCCCAGTGCACTATCGGAAAGGCTCGCCCAGGAAGTAATGGAGGCCTTC
ACTCAGAGCCAGACAGTCGGTATCGCAACTACGTTCCAAGACACCGATCTCGTCGACGGGCTGGCTAGTGATCGTTTATC
GCTGGCAGTGGGAGAAGCATACGCTCTATTGGCTCAGCACCTTCGGAGAGAAACGGCCATCCCCCGTATCGTCTTCGCCG
GCGGTGACACATCCAGCCATGCCATGCGCCGTATCGGCGCTGATGCCTTGGAGTTGGTTGCTTTTGATGAAGCACAGGGC
GGTCACCTTTGTCGCCTAATCGCTCCAGGCTCACCGATAGAGGGGTTGGAGGTAGTGCTCAAGGGCGGCCAGATCGGAGG
AGAAGACTTCTTCTCGAGGGCACAGCAAGGCACATCACCACGGGTATAA

Upstream 100 bases:

>100_bases
CGGCTAGAAGGTCGGTCGCCTTCTCAACCTCGGATCGATATCGGCTATCGCTTGATCACACGCGAAAGCACTTGAGGATC
GTCAATAGAGAGATCATGGC

Downstream 100 bases:

>100_bases
TGCGGTAATCGGTCTTAAAGCACTTTAACTCGCCGAGTGAGGCGTTGAGGACGACATGCCAAGCTTGATGCGCGGCGGCG
TGTTCCGTAGCTGCTCGCTG

Product: Hrp-dependent type III effector protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MKQLLAAFYGDDFTGSTENLAQFCRHGLRGRLFFTSSNREAILEMASELDVVGLAGTARGLAPSAMTEEVDPALALLDTL
SPRLKQFKVCSTFDSSPTVGSIGHVMDLARRRWPECALPILPATPAFGRYTAFSHLFTRYENEICRLDQNPAMAYHPSTP
MGEADLRRHLMAQTAIPPAAVTLLDYQQPDGGWQCLASAVEEQRFVVMDATQAAEIHHAAKLILKLAERHPTLAVAAQGL
ADALGGLVTRDMEQREPLPTTYPGVDRLLVLSGSCSPQTRKQLAHMEAQGGCIVAISPMEALRSPSALSERLAQEVMEAF
TQSQTVGIATTFQDTDLVDGLASDRLSLAVGEAYALLAQHLRRETAIPRIVFAGGDTSSHAMRRIGADALELVAFDEAQG
GHLCRLIAPGSPIEGLEVVLKGGQIGGEDFFSRAQQGTSPRV

Sequences:

>Translated_442_residues
MKQLLAAFYGDDFTGSTENLAQFCRHGLRGRLFFTSSNREAILEMASELDVVGLAGTARGLAPSAMTEEVDPALALLDTL
SPRLKQFKVCSTFDSSPTVGSIGHVMDLARRRWPECALPILPATPAFGRYTAFSHLFTRYENEICRLDQNPAMAYHPSTP
MGEADLRRHLMAQTAIPPAAVTLLDYQQPDGGWQCLASAVEEQRFVVMDATQAAEIHHAAKLILKLAERHPTLAVAAQGL
ADALGGLVTRDMEQREPLPTTYPGVDRLLVLSGSCSPQTRKQLAHMEAQGGCIVAISPMEALRSPSALSERLAQEVMEAF
TQSQTVGIATTFQDTDLVDGLASDRLSLAVGEAYALLAQHLRRETAIPRIVFAGGDTSSHAMRRIGADALELVAFDEAQG
GHLCRLIAPGSPIEGLEVVLKGGQIGGEDFFSRAQQGTSPRV
>Mature_442_residues
MKQLLAAFYGDDFTGSTENLAQFCRHGLRGRLFFTSSNREAILEMASELDVVGLAGTARGLAPSAMTEEVDPALALLDTL
SPRLKQFKVCSTFDSSPTVGSIGHVMDLARRRWPECALPILPATPAFGRYTAFSHLFTRYENEICRLDQNPAMAYHPSTP
MGEADLRRHLMAQTAIPPAAVTLLDYQQPDGGWQCLASAVEEQRFVVMDATQAAEIHHAAKLILKLAERHPTLAVAAQGL
ADALGGLVTRDMEQREPLPTTYPGVDRLLVLSGSCSPQTRKQLAHMEAQGGCIVAISPMEALRSPSALSERLAQEVMEAF
TQSQTVGIATTFQDTDLVDGLASDRLSLAVGEAYALLAQHLRRETAIPRIVFAGGDTSSHAMRRIGADALELVAFDEAQG
GHLCRLIAPGSPIEGLEVVLKGGQIGGEDFFSRAQQGTSPRV

Specific function: Unknown

COG id: COG3395

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygbK [H]

Homologues:

Organism=Escherichia coli, GI1789093, Length=387, Percent_Identity=26.3565891472868, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010737 [H]

Pfam domain/function: PF07005 DUF1537 [H]

EC number: NA

Molecular weight: Translated: 47635; Mature: 47635

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLLAAFYGDDFTGSTENLAQFCRHGLRGRLFFTSSNREAILEMASELDVVGLAGTARG
CHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCEEEECCCCCC
LAPSAMTEEVDPALALLDTLSPRLKQFKVCSTFDSSPTVGSIGHVMDLARRRWPECALPI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
LPATPAFGRYTAFSHLFTRYENEICRLDQNPAMAYHPSTPMGEADLRRHLMAQTAIPPAA
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCHH
VTLLDYQQPDGGWQCLASAVEEQRFVVMDATQAAEIHHAAKLILKLAERHPTLAVAAQGL
EEEEECCCCCHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
ADALGGLVTRDMEQREPLPTTYPGVDRLLVLSGSCSPQTRKQLAHMEAQGGCIVAISPME
HHHHHHHHHCCHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHH
ALRSPSALSERLAQEVMEAFTQSQTVGIATTFQDTDLVDGLASDRLSLAVGEAYALLAQH
HHCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHH
LRRETAIPRIVFAGGDTSSHAMRRIGADALELVAFDEAQGGHLCRLIAPGSPIEGLEVVL
HHHHHCCCEEEEECCCCHHHHHHHHCCHHHHHEEECCCCCCCEEEEECCCCCCCHHHHEE
KGGQIGGEDFFSRAQQGTSPRV
ECCCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKQLLAAFYGDDFTGSTENLAQFCRHGLRGRLFFTSSNREAILEMASELDVVGLAGTARG
CHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCEEEECCCCCC
LAPSAMTEEVDPALALLDTLSPRLKQFKVCSTFDSSPTVGSIGHVMDLARRRWPECALPI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
LPATPAFGRYTAFSHLFTRYENEICRLDQNPAMAYHPSTPMGEADLRRHLMAQTAIPPAA
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCHH
VTLLDYQQPDGGWQCLASAVEEQRFVVMDATQAAEIHHAAKLILKLAERHPTLAVAAQGL
EEEEECCCCCHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
ADALGGLVTRDMEQREPLPTTYPGVDRLLVLSGSCSPQTRKQLAHMEAQGGCIVAISPME
HHHHHHHHHCCHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHH
ALRSPSALSERLAQEVMEAFTQSQTVGIATTFQDTDLVDGLASDRLSLAVGEAYALLAQH
HHCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHH
LRRETAIPRIVFAGGDTSSHAMRRIGADALELVAFDEAQGGHLCRLIAPGSPIEGLEVVL
HHHHHCCCEEEEECCCCHHHHHHHHCCHHHHHEEECCCCCCCEEEEECCCCCCCHHHHEE
KGGQIGGEDFFSRAQQGTSPRV
ECCCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]