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The map label for this gene is yggS [C]

Identifier: 92115169

GI number: 92115169

Start: 3403424

End: 3404131

Strand: Direct

Name: yggS [C]

Synonym: Csal_3054

Alternate gene names: 92115169

Gene position: 3403424-3404131 (Clockwise)

Preceding gene: 92115166

Following gene: 92115170

Centisome position: 92.07

GC content: 68.64

Gene sequence:

>708_bases
ATGCCAGATGTCAACATCGTCGAATCCCTCGAGGACGCACGCAACCGTCTGCGCACTGCCTTGACGAACGCGGGACGCGA
CCCGGCTTCGGCGCACCTGCTCGCGGTCAGCAAGACGCAGCCCGCGGCGAGCGTGCGCCAGGCGTTCGAGGCGGGCCAGC
GCGAGTTCGGCGAGAACTATGTCCAGGAGGCCCTCGACAAGCAGGCCGCGCTGACCGACCTGGACGCTATCGTCTGGCAT
TTCATCGGCCCGCTGCAATCCAACAAGACCCGCGCGGTCGCCGAACACTTTCAATGGGTCCATACCCTCGACCGCGAGCG
CATCGCCCGACGACTCGCCGCGCAACGCCCGCCAGCATTGGGCCCGCTGGATGTCTGCCTGCAAGTCAACGTCAGCGGCG
AAGCCAGCAAATCGGGCGTCGCGCCGGCGGATCTGCCGGCACTGGCCGACGTGGTGGCCACGCTCCCCCAGCTGCGGCTG
CGCGGTCTGATGACACTGCCCGCGCCGAGCGACGAGCTGGCAACGCAACGACGTCCTTTCGCCGAGCTGCGCGAGCTACT
CGCGTCACTCCGCCAGCGACACCCCCAGGCGCCATTGGATACCCTGTCGATGGGCATGAGCGGCGACCTGGAAGCCGCCG
TCCTCGAAGGGGCCACCTGGGTACGCCTGGGCACGGCCATTTTCGGCCAGCGTGCGCCGCGCGCCTGA

Upstream 100 bases:

>100_bases
GCGGACAGGTGCAGGTCGGAGGCCTTCTGCTTTGCCGAGAACGCCAGCAGTTCGATAATATCCATGCATTTCTCTCGCTC
GCGGACAGGGGTTCCCCAGT

Downstream 100 bases:

>100_bases
CTGCCTTGTCCCCAACCGTATCGCGTCGCCGCGACATTCAGGAGATACCATGACCAGCCAAGTCACATTCATCGGTGCCG
GCAACATGGCGAGCGCCATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MPDVNIVESLEDARNRLRTALTNAGRDPASAHLLAVSKTQPAASVRQAFEAGQREFGENYVQEALDKQAALTDLDAIVWH
FIGPLQSNKTRAVAEHFQWVHTLDRERIARRLAAQRPPALGPLDVCLQVNVSGEASKSGVAPADLPALADVVATLPQLRL
RGLMTLPAPSDELATQRRPFAELRELLASLRQRHPQAPLDTLSMGMSGDLEAAVLEGATWVRLGTAIFGQRAPRA

Sequences:

>Translated_235_residues
MPDVNIVESLEDARNRLRTALTNAGRDPASAHLLAVSKTQPAASVRQAFEAGQREFGENYVQEALDKQAALTDLDAIVWH
FIGPLQSNKTRAVAEHFQWVHTLDRERIARRLAAQRPPALGPLDVCLQVNVSGEASKSGVAPADLPALADVVATLPQLRL
RGLMTLPAPSDELATQRRPFAELRELLASLRQRHPQAPLDTLSMGMSGDLEAAVLEGATWVRLGTAIFGQRAPRA
>Mature_234_residues
PDVNIVESLEDARNRLRTALTNAGRDPASAHLLAVSKTQPAASVRQAFEAGQREFGENYVQEALDKQAALTDLDAIVWHF
IGPLQSNKTRAVAEHFQWVHTLDRERIARRLAAQRPPALGPLDVCLQVNVSGEASKSGVAPADLPALADVVATLPQLRLR
GLMTLPAPSDELATQRRPFAELRELLASLRQRHPQAPLDTLSMGMSGDLEAAVLEGATWVRLGTAIFGQRAPRA

Specific function: Perhaps involved in proline biosynthesis [H]

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=213, Percent_Identity=41.3145539906103, Blast_Score=125, Evalue=3e-29,
Organism=Escherichia coli, GI1789321, Length=229, Percent_Identity=52.8384279475983, Blast_Score=237, Evalue=6e-64,
Organism=Caenorhabditis elegans, GI17533025, Length=240, Percent_Identity=35.4166666666667, Blast_Score=120, Evalue=6e-28,
Organism=Saccharomyces cerevisiae, GI6319435, Length=212, Percent_Identity=37.2641509433962, Blast_Score=124, Evalue=1e-29,
Organism=Drosophila melanogaster, GI45550861, Length=216, Percent_Identity=41.2037037037037, Blast_Score=148, Evalue=3e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25511; Mature: 25380

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDVNIVESLEDARNRLRTALTNAGRDPASAHLLAVSKTQPAASVRQAFEAGQREFGENY
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEECCCCCHHHHHHHHHHHHHHHHHHH
VQEALDKQAALTDLDAIVWHFIGPLQSNKTRAVAEHFQWVHTLDRERIARRLAAQRPPAL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GPLDVCLQVNVSGEASKSGVAPADLPALADVVATLPQLRLRGLMTLPAPSDELATQRRPF
CHHHEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCH
AELRELLASLRQRHPQAPLDTLSMGMSGDLEAAVLEGATWVRLGTAIFGQRAPRA
HHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PDVNIVESLEDARNRLRTALTNAGRDPASAHLLAVSKTQPAASVRQAFEAGQREFGENY
CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEECCCCCHHHHHHHHHHHHHHHHHHH
VQEALDKQAALTDLDAIVWHFIGPLQSNKTRAVAEHFQWVHTLDRERIARRLAAQRPPAL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GPLDVCLQVNVSGEASKSGVAPADLPALADVVATLPQLRLRGLMTLPAPSDELATQRRPF
CHHHEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCH
AELRELLASLRQRHPQAPLDTLSMGMSGDLEAAVLEGATWVRLGTAIFGQRAPRA
HHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1676385; 10984043; 2107123 [H]