The gene/protein map for NC_007963 is currently unavailable.
Definition Chromohalobacter salexigens DSM 3043 chromosome, complete genome.
Accession NC_007963
Length 3,696,649

Click here to switch to the map view.

The map label for this gene is ygfF [H]

Identifier: 92115036

GI number: 92115036

Start: 3253448

End: 3254188

Strand: Direct

Name: ygfF [H]

Synonym: Csal_2920

Alternate gene names: 92115036

Gene position: 3253448-3254188 (Clockwise)

Preceding gene: 92115035

Following gene: 92115037

Centisome position: 88.01

GC content: 66.94

Gene sequence:

>741_bases
ATGACGAAAGTGATGCTGATTACCGGCGCCGGTCGCGGCATCGGTGCCGCCACCGCCAAGCACGCCGCGCAAGCGGGCTA
TGCCGTTGCCATCAACTATCGCAGCGACAAGGCGTCGGCCGAGGGGGTCGTGAGTGACATCGAAGCCTCGGGCGGACGCG
CCATCGCCATTCAGGCCGATGTTGCCGACGAGGCGGACATCGTCGCCATGTTCGAGACCGTCGACCGCGAGTTCGGGCGT
CTCGACGTGCTGGTCAACAACGCCGGCATCGTCGACCAGATCAGCCGCGTCGACGAGATGAGCTTCGAGCGTGTCGACCG
CATGATGCGCATCAACGTGACCGGTCCGTTCATCTGCGCCCGCGAGGCGATCAAGCGCATGTCCACCCGCCATGGCGGCC
AGGGCGGCGCCATCGTCAACGTCGGGTCGGCCGCCTCGCACCTCGGCGGTGCCAGCGAATACGTCGATTACGCCGCCTCC
AAGGGCGCCATCGACACCATGACCGAAGGTCTCGCCAAGGAAGTCGCCGGCGAAGGCATCCGGGTCAACGGCGTGCGCCC
CGGCGTGATTCGCACCACCATTCACGCCAGTGGCGGCAACCCCGACAAGCCCGATGTCGCCGGCTCGGTGATTCCCATGG
GGCGCATCGGCGAGCCCGAGGAAATCGCCAACGGCGTGCTGTGGCTGGCCGAGGCCGGCTTCACCACCGGGGCGTTGATC
GATATCGACGGCGGCGTATGA

Upstream 100 bases:

>100_bases
GAGGACACGCGCAACTGGCTGACGCGTCTGGCCTGACGCACCCGCGCACGACGGCACGGCCCGGCCGTGCCGTCCCCTTT
TCCACGGCAAGGAGGTCACG

Downstream 100 bases:

>100_bases
CTCAAGTCGATTTCTACATCTTGCCCGATACCACGCTGGACGCGCGGCTGGCCTTCGCCTGCCGCCTGGCGGAGACCATT
CATCGCAAGGGCTATCGGCT

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MTKVMLITGAGRGIGAATAKHAAQAGYAVAINYRSDKASAEGVVSDIEASGGRAIAIQADVADEADIVAMFETVDREFGR
LDVLVNNAGIVDQISRVDEMSFERVDRMMRINVTGPFICAREAIKRMSTRHGGQGGAIVNVGSAASHLGGASEYVDYAAS
KGAIDTMTEGLAKEVAGEGIRVNGVRPGVIRTTIHASGGNPDKPDVAGSVIPMGRIGEPEEIANGVLWLAEAGFTTGALI
DIDGGV

Sequences:

>Translated_246_residues
MTKVMLITGAGRGIGAATAKHAAQAGYAVAINYRSDKASAEGVVSDIEASGGRAIAIQADVADEADIVAMFETVDREFGR
LDVLVNNAGIVDQISRVDEMSFERVDRMMRINVTGPFICAREAIKRMSTRHGGQGGAIVNVGSAASHLGGASEYVDYAAS
KGAIDTMTEGLAKEVAGEGIRVNGVRPGVIRTTIHASGGNPDKPDVAGSVIPMGRIGEPEEIANGVLWLAEAGFTTGALI
DIDGGV
>Mature_245_residues
TKVMLITGAGRGIGAATAKHAAQAGYAVAINYRSDKASAEGVVSDIEASGGRAIAIQADVADEADIVAMFETVDREFGRL
DVLVNNAGIVDQISRVDEMSFERVDRMMRINVTGPFICAREAIKRMSTRHGGQGGAIVNVGSAASHLGGASEYVDYAASK
GAIDTMTEGLAKEVAGEGIRVNGVRPGVIRTTIHASGGNPDKPDVAGSVIPMGRIGEPEEIANGVLWLAEAGFTTGALID
IDGGV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=35.3658536585366, Blast_Score=125, Evalue=4e-29,
Organism=Homo sapiens, GI59889578, Length=218, Percent_Identity=31.651376146789, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI31542939, Length=250, Percent_Identity=31.2, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI15277342, Length=252, Percent_Identity=32.9365079365079, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI10190704, Length=247, Percent_Identity=31.9838056680162, Blast_Score=98, Evalue=8e-21,
Organism=Homo sapiens, GI7705925, Length=251, Percent_Identity=31.4741035856574, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI19923817, Length=252, Percent_Identity=30.5555555555556, Blast_Score=95, Evalue=5e-20,
Organism=Homo sapiens, GI109715829, Length=248, Percent_Identity=30.241935483871, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI4758504, Length=254, Percent_Identity=31.1023622047244, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=28.4552845528455, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI40254986, Length=201, Percent_Identity=30.3482587064677, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI224922801, Length=179, Percent_Identity=32.4022346368715, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI83715985, Length=262, Percent_Identity=29.7709923664122, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI209862901, Length=202, Percent_Identity=29.7029702970297, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI19923983, Length=202, Percent_Identity=29.7029702970297, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI4504505, Length=255, Percent_Identity=30.5882352941176, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI142976729, Length=231, Percent_Identity=25.974025974026, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI66933014, Length=176, Percent_Identity=30.6818181818182, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=27.6422764227642, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI210032110, Length=196, Percent_Identity=27.5510204081633, Blast_Score=64, Evalue=1e-10,
Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=52.4590163934426, Blast_Score=254, Evalue=3e-69,
Organism=Escherichia coli, GI1788459, Length=249, Percent_Identity=34.9397590361446, Blast_Score=132, Evalue=1e-32,
Organism=Escherichia coli, GI1789378, Length=244, Percent_Identity=33.6065573770492, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI2367365, Length=244, Percent_Identity=35.655737704918, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI1787335, Length=247, Percent_Identity=33.1983805668016, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1790717, Length=248, Percent_Identity=30.6451612903226, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1789057, Length=261, Percent_Identity=29.8850574712644, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1789208, Length=250, Percent_Identity=32.4, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87082160, Length=247, Percent_Identity=29.5546558704453, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1786812, Length=257, Percent_Identity=31.1284046692607, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=31.0204081632653, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1787891, Length=241, Percent_Identity=26.5560165975104, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1787820, Length=233, Percent_Identity=24.4635193133047, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787526, Length=230, Percent_Identity=25.2173913043478, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17538182, Length=251, Percent_Identity=33.0677290836653, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=31.7073170731707, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17555706, Length=247, Percent_Identity=33.6032388663968, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=31.7647058823529, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI25147288, Length=248, Percent_Identity=31.8548387096774, Blast_Score=100, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI71994604, Length=254, Percent_Identity=30.3149606299213, Blast_Score=100, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=31.1538461538462, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17531453, Length=262, Percent_Identity=35.1145038167939, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=33.0798479087452, Blast_Score=97, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17562904, Length=259, Percent_Identity=30.8880308880309, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=32.6923076923077, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17544670, Length=265, Percent_Identity=29.811320754717, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17536651, Length=250, Percent_Identity=32, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17562990, Length=260, Percent_Identity=32.6923076923077, Blast_Score=94, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI17536025, Length=250, Percent_Identity=32.8, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=32.0610687022901, Blast_Score=90, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17551412, Length=261, Percent_Identity=31.0344827586207, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=28, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=34.2205323193916, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17538480, Length=260, Percent_Identity=30, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17563726, Length=258, Percent_Identity=29.8449612403101, Blast_Score=88, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17560676, Length=252, Percent_Identity=29.3650793650794, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17565030, Length=260, Percent_Identity=29.2307692307692, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=30.0751879699248, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17538486, Length=264, Percent_Identity=31.4393939393939, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=30.3846153846154, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17562908, Length=260, Percent_Identity=30.3846153846154, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17561272, Length=237, Percent_Identity=30.379746835443, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=262, Percent_Identity=29.7709923664122, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71982365, Length=192, Percent_Identity=26.5625, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17508651, Length=254, Percent_Identity=29.5275590551181, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71997099, Length=210, Percent_Identity=30.4761904761905, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17568967, Length=193, Percent_Identity=30.5699481865285, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17555612, Length=211, Percent_Identity=29.3838862559242, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=200, Percent_Identity=28, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17564282, Length=193, Percent_Identity=29.0155440414508, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17558628, Length=195, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=195, Percent_Identity=32.8205128205128, Blast_Score=84, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6323882, Length=194, Percent_Identity=30.9278350515464, Blast_Score=71, Evalue=2e-13,
Organism=Drosophila melanogaster, GI23397609, Length=258, Percent_Identity=36.4341085271318, Blast_Score=123, Evalue=9e-29,
Organism=Drosophila melanogaster, GI28571526, Length=250, Percent_Identity=35.2, Blast_Score=123, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24644339, Length=253, Percent_Identity=33.9920948616601, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI21357041, Length=257, Percent_Identity=34.6303501945525, Blast_Score=114, Evalue=6e-26,
Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=33.8645418326693, Blast_Score=109, Evalue=2e-24,
Organism=Drosophila melanogaster, GI17737361, Length=253, Percent_Identity=31.2252964426877, Blast_Score=101, Evalue=5e-22,
Organism=Drosophila melanogaster, GI24639444, Length=246, Percent_Identity=30.8943089430894, Blast_Score=98, Evalue=6e-21,
Organism=Drosophila melanogaster, GI24643142, Length=248, Percent_Identity=33.0645161290323, Blast_Score=93, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24644337, Length=256, Percent_Identity=33.984375, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24648693, Length=245, Percent_Identity=30.6122448979592, Blast_Score=87, Evalue=8e-18,
Organism=Drosophila melanogaster, GI21355889, Length=245, Percent_Identity=30.6122448979592, Blast_Score=87, Evalue=8e-18,
Organism=Drosophila melanogaster, GI281364494, Length=238, Percent_Identity=30.672268907563, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI116007234, Length=236, Percent_Identity=28.8135593220339, Blast_Score=81, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24641232, Length=236, Percent_Identity=30.5084745762712, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI116007236, Length=243, Percent_Identity=27.9835390946502, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI21357673, Length=202, Percent_Identity=26.7326732673267, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI116007238, Length=182, Percent_Identity=31.3186813186813, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24663911, Length=237, Percent_Identity=29.535864978903, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI28571387, Length=201, Percent_Identity=29.8507462686567, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI161076933, Length=210, Percent_Identity=28.0952380952381, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24584748, Length=210, Percent_Identity=28.0952380952381, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24641388, Length=213, Percent_Identity=30.0469483568075, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI18859837, Length=200, Percent_Identity=35, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI116007232, Length=182, Percent_Identity=29.1208791208791, Blast_Score=67, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25355; Mature: 25224

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MTKVMLITGAGRGIGAATAKHAAQAGYAVAINYRSDKASAEGVVSDIEASGGRAIAIQAD
CCEEEEEEECCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHCCCCEEEEEEEC
VADEADIVAMFETVDREFGRLDVLVNNAGIVDQISRVDEMSFERVDRMMRINVTGPFICA
CCCCCHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHEEEEECCCCHHHH
REAIKRMSTRHGGQGGAIVNVGSAASHLGGASEYVDYAASKGAIDTMTEGLAKEVAGEGI
HHHHHHHHHHCCCCCCEEEEECCHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCE
RVNGVRPGVIRTTIHASGGNPDKPDVAGSVIPMGRIGEPEEIANGVLWLAEAGFTTGALI
EECCCCCCEEEEEEEECCCCCCCCCCCCCEECCCCCCCHHHHHCCEEEEEECCCCCCEEE
DIDGGV
EECCCC
>Mature Secondary Structure 
TKVMLITGAGRGIGAATAKHAAQAGYAVAINYRSDKASAEGVVSDIEASGGRAIAIQAD
CEEEEEEECCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHCCCCEEEEEEEC
VADEADIVAMFETVDREFGRLDVLVNNAGIVDQISRVDEMSFERVDRMMRINVTGPFICA
CCCCCHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHEEEEECCCCHHHH
REAIKRMSTRHGGQGGAIVNVGSAASHLGGASEYVDYAASKGAIDTMTEGLAKEVAGEGI
HHHHHHHHHHCCCCCCEEEEECCHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCE
RVNGVRPGVIRTTIHASGGNPDKPDVAGSVIPMGRIGEPEEIANGVLWLAEAGFTTGALI
EECCCCCCEEEEEEEECCCCCCCCCCCCCEECCCCCCCHHHHHCCEEEEEECCCCCCEEE
DIDGGV
EECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 7764507 [H]