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The map label for this gene is rhaS [H]

Identifier: 92115030

GI number: 92115030

Start: 3246048

End: 3247004

Strand: Direct

Name: rhaS [H]

Synonym: Csal_2914

Alternate gene names: 92115030

Gene position: 3246048-3247004 (Clockwise)

Preceding gene: 92115027

Following gene: 92115031

Centisome position: 87.81

GC content: 68.76

Gene sequence:

>957_bases
ATGCATGCCGTTCCGCCGTCCGATTCCCTGACGCCTCGCGTCCCGTCGCCCGGTACGCTCGAGCGTCTGACGGACACGCC
GCGCACGCGGCGCCTGATCGAGAACCGCATCTGCTATGCCGGCCCGCATGCGGAACTGTCGGTCTACGACACCTGGTGGC
CCGCGCGGGACGTCGCGCTGAGCGCCGAGCGCGTGCTGTATTGCGGCATGCTCAAAGGACGCAAGGTGATGCATGGCGCG
ACCGAGGAACCGGAGACCTTCCTGCCGGGCGAGAGCTTCGTCCTGGCGCCGTATCAGGAAGTGCGCATCGATTTCCCCGA
GGCACGCCCGGATGCGCCCACCACCTGCATGACCATCGACCTCGATCCGGCGCGCGTGCACGCCCTCAGCGAACGCCTCA
ACCAGTCGCATCCCCGCGATAAAGAGCTCGGCGAATGGCATTACGCGCCGCGCGCCCTGCACGTACCGCATGGCCCGTCC
ACGCAGTCCCTCATCGAGCGCCTGATGGGACTGTTCCGCGAAAACCATCCCGACCGCGATGCCCTGATCGGCCTGGGCAT
CGACGAACTCATCGTGCGCCTCCTGCGCACCCAGTCACGCGAACTGCTGCTCGCCGACGCCCGGCAGACCCCGCCGCGCC
ATGGCCTGGCGGCCGCGCTGGCGTGGCTGGAACGCCATCCCGAGCAGCCGCTCGACGGCGCCCAGTTGGCCCGCGAAGCC
TGCATGAGCAAGGCGCGTCTGTACCGGCTGTTCCAGCGCGAGGTCGGCTGCACACCGGGGGAATATCAGCAGCGCCTGCG
CCTGGCGCGTGCCCGTCAGTGGCTGCGCGACGCCGACGCGCCCATCACCGAGATCTGCTATTCGCTCGGTTATCGCAGCC
TCAGCCACTTCACGCGGCGCTTCAAGGCCGCCTACGGCCTGACGCCCGGCGACTACCGGCGTCTGCTCATTGCCTGA

Upstream 100 bases:

>100_bases
TCCGACGTTTGTCTGCCAGTCTCAGACCTCGACTTTGCCTACACTGCAGGGTAGGCGTGATCGTCACGCCCCTGCCGTCG
GTGCCGTCGAGGAGTTCGCC

Downstream 100 bases:

>100_bases
GCCCGGTGAGTGCCCCCTGTATCGGCACTCGCTTGATCAAGGGACTTGCATTTCCATGCACGGCCGCTAGGATAGATAAC
GTTTTATTATCCCATCCCCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MHAVPPSDSLTPRVPSPGTLERLTDTPRTRRLIENRICYAGPHAELSVYDTWWPARDVALSAERVLYCGMLKGRKVMHGA
TEEPETFLPGESFVLAPYQEVRIDFPEARPDAPTTCMTIDLDPARVHALSERLNQSHPRDKELGEWHYAPRALHVPHGPS
TQSLIERLMGLFRENHPDRDALIGLGIDELIVRLLRTQSRELLLADARQTPPRHGLAAALAWLERHPEQPLDGAQLAREA
CMSKARLYRLFQREVGCTPGEYQQRLRLARARQWLRDADAPITEICYSLGYRSLSHFTRRFKAAYGLTPGDYRRLLIA

Sequences:

>Translated_318_residues
MHAVPPSDSLTPRVPSPGTLERLTDTPRTRRLIENRICYAGPHAELSVYDTWWPARDVALSAERVLYCGMLKGRKVMHGA
TEEPETFLPGESFVLAPYQEVRIDFPEARPDAPTTCMTIDLDPARVHALSERLNQSHPRDKELGEWHYAPRALHVPHGPS
TQSLIERLMGLFRENHPDRDALIGLGIDELIVRLLRTQSRELLLADARQTPPRHGLAAALAWLERHPEQPLDGAQLAREA
CMSKARLYRLFQREVGCTPGEYQQRLRLARARQWLRDADAPITEICYSLGYRSLSHFTRRFKAAYGLTPGDYRRLLIA
>Mature_318_residues
MHAVPPSDSLTPRVPSPGTLERLTDTPRTRRLIENRICYAGPHAELSVYDTWWPARDVALSAERVLYCGMLKGRKVMHGA
TEEPETFLPGESFVLAPYQEVRIDFPEARPDAPTTCMTIDLDPARVHALSERLNQSHPRDKELGEWHYAPRALHVPHGPS
TQSLIERLMGLFRENHPDRDALIGLGIDELIVRLLRTQSRELLLADARQTPPRHGLAAALAWLERHPEQPLDGAQLAREA
CMSKARLYRLFQREVGCTPGEYQQRLRLARARQWLRDADAPITEICYSLGYRSLSHFTRRFKAAYGLTPGDYRRLLIA

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=99, Percent_Identity=34.3434343434343, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790497, Length=94, Percent_Identity=37.2340425531915, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36204; Mature: 36204

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHAVPPSDSLTPRVPSPGTLERLTDTPRTRRLIENRICYAGPHAELSVYDTWWPARDVAL
CCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCEEECCCCCEEEEECCCCHHHHHH
SAERVLYCGMLKGRKVMHGATEEPETFLPGESFVLAPYQEVRIDFPEARPDAPTTCMTID
HHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCEEECCHHHHEEECCCCCCCCCCEEEEEE
LDPARVHALSERLNQSHPRDKELGEWHYAPRALHVPHGPSTQSLIERLMGLFRENHPDRD
CCHHHHHHHHHHHHCCCCCCCCCCCHHCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHH
ALIGLGIDELIVRLLRTQSRELLLADARQTPPRHGLAAALAWLERHPEQPLDGAQLAREA
HEEECCHHHHHHHHHHHCCHHEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH
CMSKARLYRLFQREVGCTPGEYQQRLRLARARQWLRDADAPITEICYSLGYRSLSHFTRR
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
FKAAYGLTPGDYRRLLIA
HHHHHCCCCHHHHHEECC
>Mature Secondary Structure
MHAVPPSDSLTPRVPSPGTLERLTDTPRTRRLIENRICYAGPHAELSVYDTWWPARDVAL
CCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCEEECCCCCEEEEECCCCHHHHHH
SAERVLYCGMLKGRKVMHGATEEPETFLPGESFVLAPYQEVRIDFPEARPDAPTTCMTID
HHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCEEECCHHHHEEECCCCCCCCCCEEEEEE
LDPARVHALSERLNQSHPRDKELGEWHYAPRALHVPHGPSTQSLIERLMGLFRENHPDRD
CCHHHHHHHHHHHHCCCCCCCCCCCHHCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHH
ALIGLGIDELIVRLLRTQSRELLLADARQTPPRHGLAAALAWLERHPEQPLDGAQLAREA
HEEECCHHHHHHHHHHHCCHHEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH
CMSKARLYRLFQREVGCTPGEYQQRLRLARARQWLRDADAPITEICYSLGYRSLSHFTRR
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
FKAAYGLTPGDYRRLLIA
HHHHHCCCCHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA