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The map label for this gene is ygdL [H]

Identifier: 92115012

GI number: 92115012

Start: 3227060

End: 3227884

Strand: Direct

Name: ygdL [H]

Synonym: Csal_2895

Alternate gene names: 92115012

Gene position: 3227060-3227884 (Clockwise)

Preceding gene: 92115011

Following gene: 92115013

Centisome position: 87.3

GC content: 71.64

Gene sequence:

>825_bases
ATGCAAGACGATTACGATTTCCGCTTCGGCGGCATCCGCCGACTGTACGGCGCCCAGGCCGCCGCGTTCTTCCGCCGCGC
CCACGTGGTGGTCATCGGCGTGGGCGGCGTGGGCAGCTGGGCCGTGGAGGCCCTGGCCCGCGCAGGCGTCGGCACCCTGA
CGCTGATCGACCTCGACGATGTCTGCGTGTCCAACGTCAACCGCCAGCTGCATGCGCTGGACGGCACCATCGGCCGGCCC
AAGGTCGAGGTGCTGGCCGAGCGTTGCCGTGCCATTCAGCCCGGGATCACCGTGCATGCGGACACCGCCTTCGTGACGCC
GACCAACCTCGCCGAGCGCCTGCCCGAGGACGCCGATCACGTCATCGACGCCATCGACAGCGTCGTCGCCAAGAGCGCGT
TGATCGCCTGGTGCAAGCGCCGCAAGATCGGCCTGACCGTCACCGGCGCGGCGGGCGGCCAGACCGACCCCACGCGGATC
CGCGTCGCCGACCTGACGCGCACCGAGCACGACCCGCTGCTCGCCAAGGTACGCGCGCGCCTGCGCCGTGACTTCGGCTT
CTCGCGCAATCCCAAGCGGCGCTTCGGCGTCGAATGCGTGTACTCCGACGAGCAGCTGGTCTACCCCGGCGCCGACGGCG
AGGTCTGCCGGCAGAAGCCCGGCGACGGCGAGGCCACCCGCCTCGACTGCGCCTCCGGCTTCGGCGCGGCGACCTTCGTC
ACCGGCAGCTTCGGTTTCGTGGCCGCCTCGCGTACGCTGGCACGGCTCGCCGCCCGAGCCGCACGCGAGGCCGCCCCCAC
CCCTTCCACGGAGACCTCCTCATGA

Upstream 100 bases:

>100_bases
GCTGGCAGGGCCACGCCCCGGCGGCCCGCGTCGCCTGGCACGCAGAACGCCCCGCCGCGTTGTTGTCACCCGGCCACGAC
CGGTAACGAGGAACGATCAC

Downstream 100 bases:

>100_bases
GCCACGACACCCGCCCGGTGCCCGGCATCTACCGTCATTACAAGGGCGCCAGCTACGAAGTGCTGGGCGTCGCCCACCAC
AGCGAGACCGAGGAACCGCT

Product: UBA/THIF-type NAD/FAD binding fold protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MQDDYDFRFGGIRRLYGAQAAAFFRRAHVVVIGVGGVGSWAVEALARAGVGTLTLIDLDDVCVSNVNRQLHALDGTIGRP
KVEVLAERCRAIQPGITVHADTAFVTPTNLAERLPEDADHVIDAIDSVVAKSALIAWCKRRKIGLTVTGAAGGQTDPTRI
RVADLTRTEHDPLLAKVRARLRRDFGFSRNPKRRFGVECVYSDEQLVYPGADGEVCRQKPGDGEATRLDCASGFGAATFV
TGSFGFVAASRTLARLAARAAREAAPTPSTETSS

Sequences:

>Translated_274_residues
MQDDYDFRFGGIRRLYGAQAAAFFRRAHVVVIGVGGVGSWAVEALARAGVGTLTLIDLDDVCVSNVNRQLHALDGTIGRP
KVEVLAERCRAIQPGITVHADTAFVTPTNLAERLPEDADHVIDAIDSVVAKSALIAWCKRRKIGLTVTGAAGGQTDPTRI
RVADLTRTEHDPLLAKVRARLRRDFGFSRNPKRRFGVECVYSDEQLVYPGADGEVCRQKPGDGEATRLDCASGFGAATFV
TGSFGFVAASRTLARLAARAAREAAPTPSTETSS
>Mature_274_residues
MQDDYDFRFGGIRRLYGAQAAAFFRRAHVVVIGVGGVGSWAVEALARAGVGTLTLIDLDDVCVSNVNRQLHALDGTIGRP
KVEVLAERCRAIQPGITVHADTAFVTPTNLAERLPEDADHVIDAIDSVVAKSALIAWCKRRKIGLTVTGAAGGQTDPTRI
RVADLTRTEHDPLLAKVRARLRRDFGFSRNPKRRFGVECVYSDEQLVYPGADGEVCRQKPGDGEATRLDCASGFGAATFV
TGSFGFVAASRTLARLAARAAREAAPTPSTETSS

Specific function: Unknown

COG id: COG1179

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesA/moeB/thiF family [H]

Homologues:

Organism=Escherichia coli, GI1789177, Length=263, Percent_Identity=55.5133079847909, Blast_Score=298, Evalue=3e-82,
Organism=Escherichia coli, GI1787048, Length=128, Percent_Identity=39.0625, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI87082356, Length=126, Percent_Identity=35.7142857142857, Blast_Score=67, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6321790, Length=209, Percent_Identity=27.7511961722488, Blast_Score=96, Evalue=5e-21,
Organism=Saccharomyces cerevisiae, GI6322825, Length=143, Percent_Identity=32.1678321678322, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594 [H]

Pfam domain/function: PF00899 ThiF [H]

EC number: NA

Molecular weight: Translated: 29353; Mature: 29353

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDDYDFRFGGIRRLYGAQAAAFFRRAHVVVIGVGGVGSWAVEALARAGVGTLTLIDLDD
CCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHCCCCEEEEEECHH
VCVSNVNRQLHALDGTIGRPKVEVLAERCRAIQPGITVHADTAFVTPTNLAERLPEDADH
HHHHHHCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEECCCEEECCHHHHHHCCCHHHH
VIDAIDSVVAKSALIAWCKRRKIGLTVTGAAGGQTDPTRIRVADLTRTEHDPLLAKVRAR
HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCHHHHHHHHH
LRRDFGFSRNPKRRFGVECVYSDEQLVYPGADGEVCRQKPGDGEATRLDCASGFGAATFV
HHHHCCCCCCCCHHHCCEEEECCCEEEECCCCCHHHHCCCCCCCCEEEECCCCCCCEEEE
TGSFGFVAASRTLARLAARAAREAAPTPSTETSS
ECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MQDDYDFRFGGIRRLYGAQAAAFFRRAHVVVIGVGGVGSWAVEALARAGVGTLTLIDLDD
CCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHCCCCEEEEEECHH
VCVSNVNRQLHALDGTIGRPKVEVLAERCRAIQPGITVHADTAFVTPTNLAERLPEDADH
HHHHHHCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEECCCEEECCHHHHHHCCCHHHH
VIDAIDSVVAKSALIAWCKRRKIGLTVTGAAGGQTDPTRIRVADLTRTEHDPLLAKVRAR
HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCHHHHHHHHH
LRRDFGFSRNPKRRFGVECVYSDEQLVYPGADGEVCRQKPGDGEATRLDCASGFGAATFV
HHHHCCCCCCCCHHHCCEEEECCCEEEECCCCCHHHHCCCCCCCCEEEECCCCCCCEEEE
TGSFGFVAASRTLARLAARAAREAAPTPSTETSS
ECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]