Click here to switch to the map view.

The map label for this gene is ygaF [H]

Identifier: 92114934

GI number: 92114934

Start: 3146201

End: 3146677

Strand: Direct

Name: ygaF [H]

Synonym: Csal_2817

Alternate gene names: 92114934

Gene position: 3146201-3146677 (Clockwise)

Preceding gene: 92114929

Following gene: 92114937

Centisome position: 85.11

GC content: 62.26

Gene sequence:

>477_bases
ATGAGCGTCACTATCGGCCACCCCGTTCCCGAGTTCACGGCCGCGGCCACCGGCGATCAGCAGGTATCGCTTTCCGACTA
TCGCGGCCGACAGCTCGTGATCTATTTCTATCCCAAGGACAGTACGCCGGGCTGCACCACCGAAGGCGGCGACTTCCGCG
ATCGCAAGGCCGACTTCGCCGACGCCAACACCGTCATCCTGGGCGTCTCGCGGGACGGCCTGCGCGCCCACGAGAACTTC
AAGGCCAAGCAGGGCTTCAACTTCGAGCTGATTTCCGACAAGGACGAAGCCCTGTGCCAGCTGTTCGACGTCATCAAGCT
CAAGAAGTTGTACGGCAAGGAGCATCTAGGCATCGAGCGCAGCACCTTCTTGATCGACCGTGACGGCAACCTGGCGCGTG
AATGGCGCAAGGTGAAGGTCAAGGGCCATGTCGAGGAAGTGCTCGAGGCCGCCCGCGAACTCAACGCCGCCTCCTGA

Upstream 100 bases:

>100_bases
TTTGACAGTCGCGTCCGGCTGCCATGTAATCTTGCGACCGACCCAGGGTGGCGACACCCTGTCATTTCATGCCCTTCATT
TCATGACCCAGGAGACTCCC

Downstream 100 bases:

>100_bases
GGTCACGCCTCTCCCGTGGGAGGTCGCAGGCCTGGGTCGCGCACGCCGCGCGGCCAGGCCTGTACCAGCGCCTTGAGCAA
GGTCGCCAGCGGAATCGCGA

Product: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen

Products: NA

Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase [H]

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MSVTIGHPVPEFTAAATGDQQVSLSDYRGRQLVIYFYPKDSTPGCTTEGGDFRDRKADFADANTVILGVSRDGLRAHENF
KAKQGFNFELISDKDEALCQLFDVIKLKKLYGKEHLGIERSTFLIDRDGNLAREWRKVKVKGHVEEVLEAARELNAAS

Sequences:

>Translated_158_residues
MSVTIGHPVPEFTAAATGDQQVSLSDYRGRQLVIYFYPKDSTPGCTTEGGDFRDRKADFADANTVILGVSRDGLRAHENF
KAKQGFNFELISDKDEALCQLFDVIKLKKLYGKEHLGIERSTFLIDRDGNLAREWRKVKVKGHVEEVLEAARELNAAS
>Mature_157_residues
SVTIGHPVPEFTAAATGDQQVSLSDYRGRQLVIYFYPKDSTPGCTTEGGDFRDRKADFADANTVILGVSRDGLRAHENFK
AKQGFNFELISDKDEALCQLFDVIKLKKLYGKEHLGIERSTFLIDRDGNLAREWRKVKVKGHVEEVLEAARELNAAS

Specific function: Unknown

COG id: COG1225

COG function: function code O; Peroxiredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI4505591, Length=139, Percent_Identity=36.6906474820144, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI32455266, Length=139, Percent_Identity=36.6906474820144, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI32455264, Length=139, Percent_Identity=36.6906474820144, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI32189392, Length=138, Percent_Identity=36.231884057971, Blast_Score=66, Evalue=1e-11,
Organism=Escherichia coli, GI1788825, Length=148, Percent_Identity=35.8108108108108, Blast_Score=105, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI193204376, Length=138, Percent_Identity=36.231884057971, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI32565831, Length=138, Percent_Identity=36.231884057971, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI17738015, Length=159, Percent_Identity=37.1069182389937, Blast_Score=77, Evalue=4e-15,

Paralogues:

None

Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000866
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00578 AhpC-TSA [H]

EC number: =1.11.1.15 [H]

Molecular weight: Translated: 17678; Mature: 17547

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVTIGHPVPEFTAAATGDQQVSLSDYRGRQLVIYFYPKDSTPGCTTEGGDFRDRKADFA
CEEECCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCC
DANTVILGVSRDGLRAHENFKAKQGFNFELISDKDEALCQLFDVIKLKKLYGKEHLGIER
CCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCHHHCCCCC
STFLIDRDGNLAREWRKVKVKGHVEEVLEAARELNAAS
EEEEEECCCCHHHHHHEEEECCCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SVTIGHPVPEFTAAATGDQQVSLSDYRGRQLVIYFYPKDSTPGCTTEGGDFRDRKADFA
EEECCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCC
DANTVILGVSRDGLRAHENFKAKQGFNFELISDKDEALCQLFDVIKLKKLYGKEHLGIER
CCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCHHHCCCCC
STFLIDRDGNLAREWRKVKVKGHVEEVLEAARELNAAS
EEEEEECCCCHHHHHHEEEECCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]