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The map label for this gene is ydcR [C]

Identifier: 92114851

GI number: 92114851

Start: 3065043

End: 3066446

Strand: Direct

Name: ydcR [C]

Synonym: Csal_2733

Alternate gene names: 92114851

Gene position: 3065043-3066446 (Clockwise)

Preceding gene: 92114838

Following gene: 92114852

Centisome position: 82.91

GC content: 69.44

Gene sequence:

>1404_bases
ATGACAATTGACCTGACTCCGTATCTGCCGTCCCAGGGGCCCAAGTATCTCGCCATCGCCCGAGCGCTCGCCGAAGCCAT
TCGCCAGGGCGAACTCACGCCGGGCACGCGTCTGCCGCCGCATCGGTGCCTCGCCGACGCACTGGCGGTCAGCGTCCAGA
CCGTCTCGCGGGCCTATGCCCAGGCGGAAAAGATGGGCCTGGTGCAGGCCCGGGTGGGCAGCGGTACCTGGATCAACACG
CTCGACGACAGCCAGGAGGCGGAATACCTGCGCAGCGCGGACCTCCCCACGGAGGGCGCGCCGGTGGACCTGTCCATCGC
CCACCCCGTCTGTCCGCCCGGCCATCATCTGCGCTTTCGCGAGACGCTGCGCGAGGTGGCGGACAGCGCGCATCCCGACG
CCATCGACGCGTGCCGCCCCATCGCCGGACTCGCGCATCAGCGCGAGCGCGCCAGTCACTGGCTTCAGGAAACGCTCGGC
GTCCCCGGCACCCCCGACGACCGCGTGCTGTGCAACGGCGCTGCCCACGGCGTCATGCTGGCCATCGCCACGCTGGTTCA
ACATGGCGATGTCGTGCTCACGGAAGCGCTCACCGACCATGGCCTGATCGCCCTGTCGCGCACGCTGGGTCTGCAACTGC
GCGGTGTGGCGATCGACGAGCAAGGCGTGATTCCCGAGGCCCTCGACGCTGCGTGCCGCCGCTATCATCCGCGTGCGGTA
TGCCTGACACCGACCCAGCACAATCCCACCGGCGCGACCATGGATGCCGACCGGCGCGACGCCATCGCCGAGGTGCTGGC
ACGCCACGGCACCTGGTTGATCGAAGACGACACCCATGCCCTGCTCGAGCCCCCGGGGCTGACGCCGCTGACCGCTCGTC
TGCCGCGCCAGAGCTTTCATGTCACCAGCCTCACCAAGGCCACCGTGCCGGGGCTGAGAGCCGGCTACCTGAGCGTGCCG
CGCGGCCAGTTGCACCACACCCTGCCGCGCCTGCGCGCGACCAGCTGGATGGCCACGCCCCTGATTTTCGAGATCGCCGA
CCGCTGGCTGGCCGATGGCAGCGTCGAGGCCCTGGCCGAGGAACAGCGCCAGCTGCTCGCCGAACGCCAGCAATTGACCC
GCTCACGCCTGCAGGGCCATGTCATGGCCTCGCGCCCCACGGGGCTGCATGTCTGGCTCGCCTTGCCACGCGCGTGGCGT
GCCGAGGAGCTCCAGCAGCAAGCGCTGCGCGAAGGCCTGGCGATCGCCACCGCGCAGCCGTTCATGGTGGGACAGGGAGC
GCCGCCGCAACGTGTCCGCCTGAGCCTCGGCGCCGAAAACGACCTCGAGCGTTTCGATCAGGGCCTGACGATTCTCGCGC
GATTGCTCGGCGAAGCCCCGCCACCAATGCTACAAAACGTATGA

Upstream 100 bases:

>100_bases
CTGACATAAGGAAGGGAAAAATCAGTACAATTGTCGATCAATGCGTCGCCGACGATACTAGCATTCACGCTCAGCGTGCC
GTCAAAGGCTTTATTGTGTC

Downstream 100 bases:

>100_bases
CGCGATGACGCACCGGGCGGTTGCCCGCCGTCACGCACGCCACTCATTCATCATCGATCCGCACGCCAATCGATTCGTAC
GCCACGAGGTTTTCATGCGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 466

Protein sequence:

>467_residues
MTIDLTPYLPSQGPKYLAIARALAEAIRQGELTPGTRLPPHRCLADALAVSVQTVSRAYAQAEKMGLVQARVGSGTWINT
LDDSQEAEYLRSADLPTEGAPVDLSIAHPVCPPGHHLRFRETLREVADSAHPDAIDACRPIAGLAHQRERASHWLQETLG
VPGTPDDRVLCNGAAHGVMLAIATLVQHGDVVLTEALTDHGLIALSRTLGLQLRGVAIDEQGVIPEALDAACRRYHPRAV
CLTPTQHNPTGATMDADRRDAIAEVLARHGTWLIEDDTHALLEPPGLTPLTARLPRQSFHVTSLTKATVPGLRAGYLSVP
RGQLHHTLPRLRATSWMATPLIFEIADRWLADGSVEALAEEQRQLLAERQQLTRSRLQGHVMASRPTGLHVWLALPRAWR
AEELQQQALREGLAIATAQPFMVGQGAPPQRVRLSLGAENDLERFDQGLTILARLLGEAPPPMLQNV

Sequences:

>Translated_467_residues
MTIDLTPYLPSQGPKYLAIARALAEAIRQGELTPGTRLPPHRCLADALAVSVQTVSRAYAQAEKMGLVQARVGSGTWINT
LDDSQEAEYLRSADLPTEGAPVDLSIAHPVCPPGHHLRFRETLREVADSAHPDAIDACRPIAGLAHQRERASHWLQETLG
VPGTPDDRVLCNGAAHGVMLAIATLVQHGDVVLTEALTDHGLIALSRTLGLQLRGVAIDEQGVIPEALDAACRRYHPRAV
CLTPTQHNPTGATMDADRRDAIAEVLARHGTWLIEDDTHALLEPPGLTPLTARLPRQSFHVTSLTKATVPGLRAGYLSVP
RGQLHHTLPRLRATSWMATPLIFEIADRWLADGSVEALAEEQRQLLAERQQLTRSRLQGHVMASRPTGLHVWLALPRAWR
AEELQQQALREGLAIATAQPFMVGQGAPPQRVRLSLGAENDLERFDQGLTILARLLGEAPPPMLQNV
>Mature_466_residues
TIDLTPYLPSQGPKYLAIARALAEAIRQGELTPGTRLPPHRCLADALAVSVQTVSRAYAQAEKMGLVQARVGSGTWINTL
DDSQEAEYLRSADLPTEGAPVDLSIAHPVCPPGHHLRFRETLREVADSAHPDAIDACRPIAGLAHQRERASHWLQETLGV
PGTPDDRVLCNGAAHGVMLAIATLVQHGDVVLTEALTDHGLIALSRTLGLQLRGVAIDEQGVIPEALDAACRRYHPRAVC
LTPTQHNPTGATMDADRRDAIAEVLARHGTWLIEDDTHALLEPPGLTPLTARLPRQSFHVTSLTKATVPGLRAGYLSVPR
GQLHHTLPRLRATSWMATPLIFEIADRWLADGSVEALAEEQRQLLAERQQLTRSRLQGHVMASRPTGLHVWLALPRAWRA
EELQQQALREGLAIATAQPFMVGQGAPPQRVRLSLGAENDLERFDQGLTILARLLGEAPPPMLQNV

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=319, Percent_Identity=21.6300940438871, Blast_Score=89, Evalue=8e-18,
Organism=Homo sapiens, GI33469970, Length=319, Percent_Identity=21.6300940438871, Blast_Score=89, Evalue=8e-18,
Organism=Escherichia coli, GI1787710, Length=476, Percent_Identity=26.4705882352941, Blast_Score=106, Evalue=4e-24,
Organism=Escherichia coli, GI1790797, Length=435, Percent_Identity=24.8275862068966, Blast_Score=101, Evalue=8e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 50813; Mature: 50682

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIDLTPYLPSQGPKYLAIARALAEAIRQGELTPGTRLPPHRCLADALAVSVQTVSRAYA
CEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
QAEKMGLVQARVGSGTWINTLDDSQEAEYLRSADLPTEGAPVDLSIAHPVCPPGHHLRFR
HHHHHHHHEEECCCCCEECCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHH
ETLREVADSAHPDAIDACRPIAGLAHQRERASHWLQETLGVPGTPDDRVLCNGAAHGVML
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHH
AIATLVQHGDVVLTEALTDHGLIALSRTLGLQLRGVAIDEQGVIPEALDAACRRYHPRAV
HHHHHHHCCCEEEEHHHCCCCHHEEHHHHCCEEEEEEECCCCCCHHHHHHHHHHCCCCEE
CLTPTQHNPTGATMDADRRDAIAEVLARHGTWLIEDDTHALLEPPGLTPLTARLPRQSFH
EECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCHHEECCCCCCCHHHHCCCCCCC
VTSLTKATVPGLRAGYLSVPRGQLHHTLPRLRATSWMATPLIFEIADRWLADGSVEALAE
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
EQRQLLAERQQLTRSRLQGHVMASRPTGLHVWLALPRAWRAEELQQQALREGLAIATAQP
HHHHHHHHHHHHHHHHHHCCEEECCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEECCC
FMVGQGAPPQRVRLSLGAENDLERFDQGLTILARLLGEAPPPMLQNV
EEECCCCCCHHEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCC
>Mature Secondary Structure 
TIDLTPYLPSQGPKYLAIARALAEAIRQGELTPGTRLPPHRCLADALAVSVQTVSRAYA
EEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
QAEKMGLVQARVGSGTWINTLDDSQEAEYLRSADLPTEGAPVDLSIAHPVCPPGHHLRFR
HHHHHHHHEEECCCCCEECCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHH
ETLREVADSAHPDAIDACRPIAGLAHQRERASHWLQETLGVPGTPDDRVLCNGAAHGVML
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHH
AIATLVQHGDVVLTEALTDHGLIALSRTLGLQLRGVAIDEQGVIPEALDAACRRYHPRAV
HHHHHHHCCCEEEEHHHCCCCHHEEHHHHCCEEEEEEECCCCCCHHHHHHHHHHCCCCEE
CLTPTQHNPTGATMDADRRDAIAEVLARHGTWLIEDDTHALLEPPGLTPLTARLPRQSFH
EECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCHHEECCCCCCCHHHHCCCCCCC
VTSLTKATVPGLRAGYLSVPRGQLHHTLPRLRATSWMATPLIFEIADRWLADGSVEALAE
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
EQRQLLAERQQLTRSRLQGHVMASRPTGLHVWLALPRAWRAEELQQQALREGLAIATAQP
HHHHHHHHHHHHHHHHHHCCEEECCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEECCC
FMVGQGAPPQRVRLSLGAENDLERFDQGLTILARLLGEAPPPMLQNV
EEECCCCCCHHEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]