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The map label for this gene is ybfI [H]

Identifier: 92114837

GI number: 92114837

Start: 3047903

End: 3048733

Strand: Direct

Name: ybfI [H]

Synonym: Csal_2719

Alternate gene names: 92114837

Gene position: 3047903-3048733 (Clockwise)

Preceding gene: 92114835

Following gene: 92114838

Centisome position: 82.45

GC content: 57.28

Gene sequence:

>831_bases
ATGCAATCCACGAGTCGTTTCCGGTTCATGAAAAGCCGGCATGTGGCACGCATGACGGCATTGCATGCCACGATGAACGA
CTTCCAGTACGACCGGCATGCGCATGAAGAATATGCCCTGGGTGTCACGCTGGCGGGACGTCAGGATTTCTTCAGCAACG
GTGAATTTCACCGCAGCCCACCAGGTAGCGTGATCACTTTGCATCCCGATGAAGTGCATGACGGCCACGCCGGGGGCGGC
GACGCCCTCGATTATGTCATGCTCTATATTCATCCCGACGAGCTCGACCCGCTCATTGCCAATGCCATGGGCGTGCAAGG
CCTGCAGGCCGCTCGCCTGGCCCCCACCCTCACGAAAGATGTTCCCTTGCGCGACGAGATCATCGCCCTGTCACGCATGA
TCGAGGAACAGGAGACGAGCCAGATCGAGCAAGAATATGCGCTGTATCGCATTGCGGCTCGTCTGGCCGAACGCGCCGGA
AACTTTGCCCCCAACGAGCGGGCCAGGCGGCCGGACTCGCTGCTCGAAAGAGCGAAGGACTTCATCCATGAAAATGCCAG
ATACGATATCAGCCTGGATGACATCAGCCATGCCGCCAGCATTTCCAAGTATCACTTCCTGAGAGCGTTCAGGACACAGT
ACGGCATTACGCCGCACCAATATGTATTGAACTGCAGGGTCAATGCCGCCCGGCGCCACCTCGAAAACGGCGAGAGTGTC
ATGGAGGCTGCCTTATGCTGCGGCTTTGCTGACCTCAGTCACTTCAACCGTCGTTTCAAGCGGATTTACGGCATGACACC
ACGACAATACCAAGCCCATATTTTCGCCTAG

Upstream 100 bases:

>100_bases
TCGCCGAAAGCACAAAGTGCGCAATATCGTTCAAGCCCGCTCCCGCGTGACGCGCTAAAGTGGCGTTGTCATGGCACGAC
CGGGTCGTAAGGAGGACACC

Downstream 100 bases:

>100_bases
CAAGACAGGAAATCCTCATGCTCGCGATGCTCGCCTATGCCATAAGCGTGATGTACACGCCCGGGCCGGTGAACCTGCTC
GGCCTGAATGCCGGAATCAA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MQSTSRFRFMKSRHVARMTALHATMNDFQYDRHAHEEYALGVTLAGRQDFFSNGEFHRSPPGSVITLHPDEVHDGHAGGG
DALDYVMLYIHPDELDPLIANAMGVQGLQAARLAPTLTKDVPLRDEIIALSRMIEEQETSQIEQEYALYRIAARLAERAG
NFAPNERARRPDSLLERAKDFIHENARYDISLDDISHAASISKYHFLRAFRTQYGITPHQYVLNCRVNAARRHLENGESV
MEAALCCGFADLSHFNRRFKRIYGMTPRQYQAHIFA

Sequences:

>Translated_276_residues
MQSTSRFRFMKSRHVARMTALHATMNDFQYDRHAHEEYALGVTLAGRQDFFSNGEFHRSPPGSVITLHPDEVHDGHAGGG
DALDYVMLYIHPDELDPLIANAMGVQGLQAARLAPTLTKDVPLRDEIIALSRMIEEQETSQIEQEYALYRIAARLAERAG
NFAPNERARRPDSLLERAKDFIHENARYDISLDDISHAASISKYHFLRAFRTQYGITPHQYVLNCRVNAARRHLENGESV
MEAALCCGFADLSHFNRRFKRIYGMTPRQYQAHIFA
>Mature_276_residues
MQSTSRFRFMKSRHVARMTALHATMNDFQYDRHAHEEYALGVTLAGRQDFFSNGEFHRSPPGSVITLHPDEVHDGHAGGG
DALDYVMLYIHPDELDPLIANAMGVQGLQAARLAPTLTKDVPLRDEIIALSRMIEEQETSQIEQEYALYRIAARLAERAG
NFAPNERARRPDSLLERAKDFIHENARYDISLDDISHAASISKYHFLRAFRTQYGITPHQYVLNCRVNAARRHLENGESV
MEAALCCGFADLSHFNRRFKRIYGMTPRQYQAHIFA

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31518; Mature: 31518

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSTSRFRFMKSRHVARMTALHATMNDFQYDRHAHEEYALGVTLAGRQDFFSNGEFHRSP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHCCCCCCCCC
PGSVITLHPDEVHDGHAGGGDALDYVMLYIHPDELDPLIANAMGVQGLQAARLAPTLTKD
CCCEEEECCCCCCCCCCCCCCHHEEEEEEEECCCCCHHHHHHHCCCCHHHHHHCCHHHCC
VPLRDEIIALSRMIEEQETSQIEQEYALYRIAARLAERAGNFAPNERARRPDSLLERAKD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHH
FIHENARYDISLDDISHAASISKYHFLRAFRTQYGITPHQYVLNCRVNAARRHLENGESV
HHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEHHHHHHHHHCCHHH
MEAALCCGFADLSHFNRRFKRIYGMTPRQYQAHIFA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECC
>Mature Secondary Structure
MQSTSRFRFMKSRHVARMTALHATMNDFQYDRHAHEEYALGVTLAGRQDFFSNGEFHRSP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHCCCCCCCCC
PGSVITLHPDEVHDGHAGGGDALDYVMLYIHPDELDPLIANAMGVQGLQAARLAPTLTKD
CCCEEEECCCCCCCCCCCCCCHHEEEEEEEECCCCCHHHHHHHCCCCHHHHHHCCHHHCC
VPLRDEIIALSRMIEEQETSQIEQEYALYRIAARLAERAGNFAPNERARRPDSLLERAKD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHH
FIHENARYDISLDDISHAASISKYHFLRAFRTQYGITPHQYVLNCRVNAARRHLENGESV
HHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEHHHHHHHHHCCHHH
MEAALCCGFADLSHFNRRFKRIYGMTPRQYQAHIFA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]