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The map label for this gene is psd

Identifier: 92114647

GI number: 92114647

Start: 2835867

End: 2836709

Strand: Direct

Name: psd

Synonym: Csal_2529

Alternate gene names: 92114647

Gene position: 2835867-2836709 (Clockwise)

Preceding gene: 92114646

Following gene: 92114650

Centisome position: 76.71

GC content: 65.72

Gene sequence:

>843_bases
GTGGATACGCCCGTGGATCGCGACGAACTCTTCGCCAGAATGCAGTACCCCCTTCCCCACCACCTGATCTCGCGTGGGGT
GGGCAAGCTCGCCGAGAGCCGTACGCCATGGCTCAAGGACTGGGCGATTCGGCGTTTCATTCGTACCTTCGATGTCGACA
TGAGCCAGGCGCTCGAAAGCGACCCCGAGGCTTACGCCTGTTTCAACGACTTCTTCACCCGGGCGTTGCGCGCGGATGCC
CGGCCCATCGGCGAGGGCGTGGTCTCGCCGGCCGACGGCACGCTCTCGCAGTTCGGCGCCATACGCCAGGACACCCTGGT
CCAGGCCAAGGGGCATACCTACTCGCTGAACGCCCTGCTCGGCGGTGACGCCGCCCGCGCCGCGCCGTTCCGGGAGGGCA
GCTTCGCCACCGTCTACCTGTCCCCGCGCGACTATCACCGCGTGCACATGCCCGTCACCGGCACCCTGCGCGAAATGGTC
TATGTGCCGGGGCGGTTGTTCTCGGTCAATCAAGCCACCGCCAACCACGTGCCGGGGCTCTTCGCCCGCAACGAGCGTCT
GGTCTGCCTGTTCGACACCGAACACGGTCCGCTGGCGATGGTGCTGGTCGGCGCGATGATCGTCGCCGCCATCGAAACGG
TATGGGCGGGTCAGGTCACCCCGCTCAGCGGACGTGTCCAGACGACACGTTTCGACGAGCCCATCGTGATCGAGAAGGGT
CAGGAAATGGGTCGCTTCAAGCTCGGCTCCACCGTGGTGATGTGCTTCGGCCACGACGTCGCATTTCGCGATGTCTGCAC
CGACGGCCTGGTGGTCAACATGGGGCAGTCCCTCGCTTCCTGA

Upstream 100 bases:

>100_bases
GACTGGACGAGGGACGCGCGTTCGATCCTCTCGTCGCCGTCAACGAAGTATTGCGACGCCCCGCCGCTGCGACTAAGGTG
GCGGGTCCTCTTCCGTTGCC

Downstream 100 bases:

>100_bases
GCGCCTCGGCCAGGATAGAGTCGCCGGGCAAGGCGAAGCGAGGGGCTTTTAGCCGGGGATGGAAAAGTAGCGCCCGGGGA
AGGTTTACAGCGCCCCCGCT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MDTPVDRDELFARMQYPLPHHLISRGVGKLAESRTPWLKDWAIRRFIRTFDVDMSQALESDPEAYACFNDFFTRALRADA
RPIGEGVVSPADGTLSQFGAIRQDTLVQAKGHTYSLNALLGGDAARAAPFREGSFATVYLSPRDYHRVHMPVTGTLREMV
YVPGRLFSVNQATANHVPGLFARNERLVCLFDTEHGPLAMVLVGAMIVAAIETVWAGQVTPLSGRVQTTRFDEPIVIEKG
QEMGRFKLGSTVVMCFGHDVAFRDVCTDGLVVNMGQSLAS

Sequences:

>Translated_280_residues
MDTPVDRDELFARMQYPLPHHLISRGVGKLAESRTPWLKDWAIRRFIRTFDVDMSQALESDPEAYACFNDFFTRALRADA
RPIGEGVVSPADGTLSQFGAIRQDTLVQAKGHTYSLNALLGGDAARAAPFREGSFATVYLSPRDYHRVHMPVTGTLREMV
YVPGRLFSVNQATANHVPGLFARNERLVCLFDTEHGPLAMVLVGAMIVAAIETVWAGQVTPLSGRVQTTRFDEPIVIEKG
QEMGRFKLGSTVVMCFGHDVAFRDVCTDGLVVNMGQSLAS
>Mature_280_residues
MDTPVDRDELFARMQYPLPHHLISRGVGKLAESRTPWLKDWAIRRFIRTFDVDMSQALESDPEAYACFNDFFTRALRADA
RPIGEGVVSPADGTLSQFGAIRQDTLVQAKGHTYSLNALLGGDAARAAPFREGSFATVYLSPRDYHRVHMPVTGTLREMV
YVPGRLFSVNQATANHVPGLFARNERLVCLFDTEHGPLAMVLVGAMIVAAIETVWAGQVTPLSGRVQTTRFDEPIVIEKG
QEMGRFKLGSTVVMCFGHDVAFRDVCTDGLVVNMGQSLAS

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily

Homologues:

Organism=Homo sapiens, GI13489112, Length=311, Percent_Identity=32.1543408360129, Blast_Score=138, Evalue=7e-33,
Organism=Escherichia coli, GI1790604, Length=276, Percent_Identity=51.0869565217391, Blast_Score=270, Evalue=7e-74,
Organism=Caenorhabditis elegans, GI71980840, Length=275, Percent_Identity=31.2727272727273, Blast_Score=132, Evalue=2e-31,
Organism=Caenorhabditis elegans, GI71980843, Length=275, Percent_Identity=31.2727272727273, Blast_Score=132, Evalue=2e-31,
Organism=Saccharomyces cerevisiae, GI6321609, Length=223, Percent_Identity=30.4932735426009, Blast_Score=96, Evalue=5e-21,
Organism=Saccharomyces cerevisiae, GI6324160, Length=137, Percent_Identity=30.6569343065693, Blast_Score=65, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24649526, Length=314, Percent_Identity=30.2547770700637, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24649528, Length=314, Percent_Identity=30.2547770700637, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24649524, Length=314, Percent_Identity=30.2547770700637, Blast_Score=122, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_CHRSD (Q1QUI2)

Other databases:

- EMBL:   CP000285
- RefSeq:   YP_574575.1
- STRING:   Q1QUI2
- GeneID:   4026935
- GenomeReviews:   CP000285_GR
- KEGG:   csa:Csal_2529
- NMPDR:   fig|290398.4.peg.1695
- eggNOG:   COG0688
- HOGENOM:   HBG302256
- OMA:   MATVWHG
- BioCyc:   CSAL290398:CSAL_2529-MONOMER
- HAMAP:   MF_00662
- InterPro:   IPR003817
- InterPro:   IPR005221
- PANTHER:   PTHR10067
- TIGRFAMs:   TIGR00163

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 30891; Mature: 30891

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTPVDRDELFARMQYPLPHHLISRGVGKLAESRTPWLKDWAIRRFIRTFDVDMSQALES
CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHC
DPEAYACFNDFFTRALRADARPIGEGVVSPADGTLSQFGAIRQDTLVQAKGHTYSLNALL
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCHHHHHEEEECCCEEEEEEEE
GGDAARAAPFREGSFATVYLSPRDYHRVHMPVTGTLREMVYVPGRLFSVNQATANHVPGL
CCCHHHCCCCCCCCEEEEEECCCCCEEEECCCHHHHHHHHHCCCEEEEECCCHHHCCCCE
FARNERLVCLFDTEHGPLAMVLVGAMIVAAIETVWAGQVTPLSGRVQTTRFDEPIVIEKG
EECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEECC
QEMGRFKLGSTVVMCFGHDVAFRDVCTDGLVVNMGQSLAS
CCCCCEECCCEEEEEECCCHHHHHHCCCCEEEECCHHHCC
>Mature Secondary Structure
MDTPVDRDELFARMQYPLPHHLISRGVGKLAESRTPWLKDWAIRRFIRTFDVDMSQALES
CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHC
DPEAYACFNDFFTRALRADARPIGEGVVSPADGTLSQFGAIRQDTLVQAKGHTYSLNALL
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCHHHHHEEEECCCEEEEEEEE
GGDAARAAPFREGSFATVYLSPRDYHRVHMPVTGTLREMVYVPGRLFSVNQATANHVPGL
CCCHHHCCCCCCCCEEEEEECCCCCEEEECCCHHHHHHHHHCCCEEEEECCCHHHCCCCE
FARNERLVCLFDTEHGPLAMVLVGAMIVAAIETVWAGQVTPLSGRVQTTRFDEPIVIEKG
EECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEECC
QEMGRFKLGSTVVMCFGHDVAFRDVCTDGLVVNMGQSLAS
CCCCCEECCCEEEEEECCCHHHHHHCCCCEEEECCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA