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The map label for this gene is cspA [H]

Identifier: 92114621

GI number: 92114621

Start: 2811713

End: 2811919

Strand: Direct

Name: cspA [H]

Synonym: Csal_2503

Alternate gene names: 92114621

Gene position: 2811713-2811919 (Clockwise)

Preceding gene: 92114617

Following gene: 92114628

Centisome position: 76.06

GC content: 53.14

Gene sequence:

>207_bases
ATGGCAACTGGCACTGTCAAATGGTTCAACGACACCAAAGGCTACGGCTTCATCTCTCCGGATGATGGTGGCGATGACCT
CTTCGCACACTTCTCCGAGATCCAGGCCGAAGGCTTCAAATCTCTGCAGGATGGCCAGAAAGTGAGCTTCGAGGTCACTC
AAGGCAAGAAAGGCCTTCAGGCATCCAACATCAAGGTCGTCGACTGA

Upstream 100 bases:

>100_bases
TCCTCGATGTCCCTCACGCATTCCCACCTTGTCTTACCCACGTATCACGGTCGCCCATGGGTCGGCCCGCAACACTACTT
TGCAAGTTAAGGAATTCGAA

Downstream 100 bases:

>100_bases
GTCCCGGACCCAGTCGATGCACCTGCGGTCGTGAGGCCGATAACGGACTCCGAACGCATGAGCCCACCTGACGGTGGGCT
CTTTTGTTTCCGGACACCCG

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 68; Mature: 67

Protein sequence:

>68_residues
MATGTVKWFNDTKGYGFISPDDGGDDLFAHFSEIQAEGFKSLQDGQKVSFEVTQGKKGLQASNIKVVD

Sequences:

>Translated_68_residues
MATGTVKWFNDTKGYGFISPDDGGDDLFAHFSEIQAEGFKSLQDGQKVSFEVTQGKKGLQASNIKVVD
>Mature_67_residues
ATGTVKWFNDTKGYGFISPDDGGDDLFAHFSEIQAEGFKSLQDGQKVSFEVTQGKKGLQASNIKVVD

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=61, Percent_Identity=59.0163934426229, Blast_Score=87, Evalue=2e-19,
Organism=Escherichia coli, GI1787107, Length=68, Percent_Identity=55.8823529411765, Blast_Score=85, Evalue=8e-19,
Organism=Escherichia coli, GI1789979, Length=62, Percent_Identity=61.2903225806452, Blast_Score=83, Evalue=4e-18,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=54.6875, Blast_Score=80, Evalue=2e-17,
Organism=Escherichia coli, GI2367114, Length=62, Percent_Identity=53.2258064516129, Blast_Score=80, Evalue=3e-17,
Organism=Escherichia coli, GI1787839, Length=66, Percent_Identity=53.030303030303, Blast_Score=79, Evalue=5e-17,
Organism=Escherichia coli, GI1787834, Length=62, Percent_Identity=51.6129032258064, Blast_Score=72, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI71983217, Length=55, Percent_Identity=45.4545454545455, Blast_Score=61, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=45.9016393442623, Blast_Score=70, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7387; Mature: 7256

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGTVKWFNDTKGYGFISPDDGGDDLFAHFSEIQAEGFKSLQDGQKVSFEVTQGKKGLQ
CCCCCEEECCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
ASNIKVVD
CCCEEEEC
>Mature Secondary Structure 
ATGTVKWFNDTKGYGFISPDDGGDDLFAHFSEIQAEGFKSLQDGQKVSFEVTQGKKGLQ
CCCCEEECCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
ASNIKVVD
CCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA