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The map label for this gene is opuBB [H]

Identifier: 92114473

GI number: 92114473

Start: 2644206

End: 2644868

Strand: Direct

Name: opuBB [H]

Synonym: Csal_2353

Alternate gene names: 92114473

Gene position: 2644206-2644868 (Clockwise)

Preceding gene: 92114471

Following gene: 92114474

Centisome position: 71.53

GC content: 64.56

Gene sequence:

>663_bases
GTGGAATTACTGCAATATTTTCTCGACAATCTCGAGTTGCTGGGGACCCTCACCCTCGAGCACATCAGTCTGGTGGGTGT
CGCGGTGGGGATCGCCACGCTGACCGGCGTTCCCATCGGCATCGCCATCACCAAGAACGAGCGCATCGCCAAGACCGTGC
TCTACATCGCCTCGATCATCGTGACCATTCCCTCCATCGCGCTGTTCGGGATCATGATTCCGATCCTCTCGATCATCGGC
CAGGGCATCGGCTACATGCCGGCGGTCATCGCGGTGCTGCTGTACTCGCAGCTGCCGATCATCCGCAACACCTACACCGC
CATCAACAACGTCGACCCGGCCCTGCGCGAAGCCGCGCGCGGCGTGGGCATGAGCCAGAACCAGCGCCTGCGCATGGTCG
AGATTCCGCTCGCCGTGCCGGTGATCATGGCCGGCGTGCGTACCGCCGTGGTGCTCAACATCGGCGTCATGGCGATCGCC
GCCTACATCGGCGCCGGCGGGCTCGGCACGCTCATCAGCCGCGGCATTTCCCAGTCCGATCCCCGTCAGCTGATCCTCGG
CGCCGTGGCCGTCAGCGTGTTGGCGATCATCGTCGACTATGCGCTGCTGGCCCTGCAGAAGCGGCTGACGCCCAAGGGCA
TGGAACGCGCCGCCACCACCTGA

Upstream 100 bases:

>100_bases
TTATGCTCATCACATAATACGAACTTATAAAAAGCCTTTCATATAAGAAATTTATACGAGTTCAAACAAACCACTCCATC
GCGAGTGCGAGGTCCGTGCC

Downstream 100 bases:

>100_bases
TTCGCCTCCGCTCCACGCGCTGCAAACTACAACAGGCTGCCGACCCGACAAGGACCGCTTCATGATTCGACTCGACAACT
TGACCAAGGTCTTCGACACG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MELLQYFLDNLELLGTLTLEHISLVGVAVGIATLTGVPIGIAITKNERIAKTVLYIASIIVTIPSIALFGIMIPILSIIG
QGIGYMPAVIAVLLYSQLPIIRNTYTAINNVDPALREAARGVGMSQNQRLRMVEIPLAVPVIMAGVRTAVVLNIGVMAIA
AYIGAGGLGTLISRGISQSDPRQLILGAVAVSVLAIIVDYALLALQKRLTPKGMERAATT

Sequences:

>Translated_220_residues
MELLQYFLDNLELLGTLTLEHISLVGVAVGIATLTGVPIGIAITKNERIAKTVLYIASIIVTIPSIALFGIMIPILSIIG
QGIGYMPAVIAVLLYSQLPIIRNTYTAINNVDPALREAARGVGMSQNQRLRMVEIPLAVPVIMAGVRTAVVLNIGVMAIA
AYIGAGGLGTLISRGISQSDPRQLILGAVAVSVLAIIVDYALLALQKRLTPKGMERAATT
>Mature_220_residues
MELLQYFLDNLELLGTLTLEHISLVGVAVGIATLTGVPIGIAITKNERIAKTVLYIASIIVTIPSIALFGIMIPILSIIG
QGIGYMPAVIAVLLYSQLPIIRNTYTAINNVDPALREAARGVGMSQNQRLRMVEIPLAVPVIMAGVRTAVVLNIGVMAIA
AYIGAGGLGTLISRGISQSDPRQLILGAVAVSVLAIIVDYALLALQKRLTPKGMERAATT

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=190, Percent_Identity=40.5263157894737, Blast_Score=127, Evalue=6e-31,
Organism=Escherichia coli, GI1788451, Length=210, Percent_Identity=33.8095238095238, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1789033, Length=185, Percent_Identity=36.2162162162162, Blast_Score=101, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23178; Mature: 23178

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLQYFLDNLELLGTLTLEHISLVGVAVGIATLTGVPIGIAITKNERIAKTVLYIASII
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH
VTIPSIALFGIMIPILSIIGQGIGYMPAVIAVLLYSQLPIIRNTYTAINNVDPALREAAR
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHH
GVGMSQNQRLRMVEIPLAVPVIMAGVRTAVVLNIGVMAIAAYIGAGGLGTLISRGISQSD
CCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCC
PRQLILGAVAVSVLAIIVDYALLALQKRLTPKGMERAATT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCC
>Mature Secondary Structure
MELLQYFLDNLELLGTLTLEHISLVGVAVGIATLTGVPIGIAITKNERIAKTVLYIASII
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH
VTIPSIALFGIMIPILSIIGQGIGYMPAVIAVLLYSQLPIIRNTYTAINNVDPALREAAR
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHH
GVGMSQNQRLRMVEIPLAVPVIMAGVRTAVVLNIGVMAIAAYIGAGGLGTLISRGISQSD
CCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCC
PRQLILGAVAVSVLAIIVDYALLALQKRLTPKGMERAATT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7592481; 10216873; 9384377 [H]