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The map label for this gene is cph2 [H]

Identifier: 92114262

GI number: 92114262

Start: 2408710

End: 2410791

Strand: Direct

Name: cph2 [H]

Synonym: Csal_2140

Alternate gene names: 92114262

Gene position: 2408710-2410791 (Clockwise)

Preceding gene: 92114261

Following gene: 92114265

Centisome position: 65.16

GC content: 64.22

Gene sequence:

>2082_bases
ATGGCGCATGACGGTTTCCCTCTTCCCCGACCACGACCGGTGTCACGCATGATTTCCGACATCGTCCGTCGGTTGCACCA
TTTGCGTAGCGAGCATCGACGCAATATCGCGCTCTTCTGCGCCCTGGTGGCGGGCAGCGGGCTGGCCGTGCTCATGTCGC
TGTTTTTCGATGGCAGCATGACGGGGCTGCTCATCGTGATCGGCGGCGTGATCCTGCTGGCGACATTGCTCCTGCGGCGC
ATGGCCCGCCAGACGCGGGACAGCATTCGCCAGTGGCAAGCCTTGCTGAACGCCCAGCAGCGCCAGGCGGATCAGCAGGA
AGCCTGGCGCCGCATGCGCGAGCTTCTGCAACGCGATCTGGACGAGGATGCCTTCCTGCGGGCCTTGCTCGATACCACTG
CCGAAGTGCTCGGCGTCGAGCGTGCCGGCCTGTGGTTCCTCGACGAAGACCGCGCCCTGACCTGTCGCATGTCCCTCATC
GACTCACTCAATGGCTTGCGACTGCCCCCCAACGGGCTGGATGGCTATCTTGCATCGCTGACATACAACCCTTGTCTGGT
CACCTCCGACGCCCAGCACGACGAACGGCTAGCCGGCCTGCGCGACTACCTTCGGGACAATCGCATTCAGGCCATGCTGG
ACGTCGGCATTTTCGTCGGCGGCGAGCTGCGCGGCGCGATTTGCTGCGAATCGACGCATCCGCGTGAATGGCAGGGTGAT
GAAATCACCAGTCTGATGGGCTTCGCGGGATTGTTGTCGCAATTTTCCGAATCCCTGCGCCGGCGGGAGGTCGAACACGA
CCTGTATCGTCAGCTGCACCATGACGAAGTCTCCGACCTGGCGACGTTGAAGGGGTTGCTCGAGCGTCTTCACGCCCTGA
TCCGGAGCCATGGTTCCTTCCATCTGCTGGTGGTACGCCTCGGCGGACTCAGTCATATCAACGAGACCCTGGGGCAGCAG
GCCGGGGACGAAGCGATTCGTCAGGTGGCGGCCAAGCTCAAGGAGCGCCTGACCGAGCTGCAAGGCGAGATCCTCATCGG
GCGTCTTCCGGCCAACCGGCTGTTGATCACGATTCCCGGCCAGACCGACGACTCGTTGCGCCGCTACTGCCTGCAACGGC
TGCTGACCCTCGGGGATGGCACCTGGCGCGTCTTCGGCACTCCCTGCCAGTTGCGCTTCAACATCGGCGTGACGCGTTAC
CCCTACGACGCCAGCGACATCGAATCCCTGCTGCAACGTGCCGAACTCGCCGTACAGCATGCCCGCGAAACCCTGCCTCA
CCATCTGGCCTTCTACACCAGCCAGCTGAGTGACTGGGAGCATCGCCTGAGCCGTCTGGAACGCGAGCTGCGTACGGCGC
TCGACGCGCAGCAACTGCGTCTTTACCTGCAGGGACAATTCGATACCTCGGGCCGGCTGGCCGGCGCCGAGGTGCTGCTG
CGCTGGCAGCACCCGCGCGAAGGCCTGCTGGCGCCCGGCAGCTTCATCGCCGAAGCCGAGCACAGCGGGCTGATCCGCCC
CATGGGGCAATGGGTCCTCGAACAAGCTTGCGCCCTGCTCGGCGGCGTGCTGCGCGACAGCGACCTGACCCTCTCGGTCA
ACGTCTCGGTGCAGCAGCTGCATGACGATGCGTTCATCACGACCCTGACGCACCTGCTCGACCGGCATGGGTTCGCGCCT
CACCGGCTGATCCTGGAGGTCGTCGAGTCCCTGCTGGTGACGCCGGGCGTCGCCAGCCGGCTCAACGCACTGCGGGCACT
GGGCATTCGTCTTGCCCTGGACGACTTCGGCACCGGCTACTCGTCGCTGCGCTATCTGCAGGATTTCCAGGTCGACGAGA
TCAAGATCGACAAGATCTTCGTCGACGCCATCAAGGAACGCCAGGACGCGCCCCTGGTACGCTCGATCATCGCGCTTGGC
AAGGCTCTGGAGCTGCGCGTGGTGGCCGAAGGCATCGAGAGCGCATTTCAACAGGACTATCTGGTCACCAACGGCGTCGA
TTTCCTGCAGGGGTATTACCTGGCGCGTCCCGAACCGGTAGACGCCTTCCTGCGTCGCCTGGACGCGCCATCGAGGCGAT
GA

Upstream 100 bases:

>100_bases
GTGCTTCCCTCCACCCCTGATTCACTGACAAGATGGATCTGCGGCGGGCGATGCATCGCCAGGCCACCGACGAGTGCGGC
CCCTTTCGACACAACGCAGG

Downstream 100 bases:

>100_bases
CGCACGCCGCCCCAAGCATCACGCCTTGCGATCCTCCACCTCCGCCGCCGTCACGTCGGCAGCTAGCGGATGCCCCTTGG
CCAGTTCCGCCCGGGTCGCC

Product: GAF sensor-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 693; Mature: 692

Protein sequence:

>693_residues
MAHDGFPLPRPRPVSRMISDIVRRLHHLRSEHRRNIALFCALVAGSGLAVLMSLFFDGSMTGLLIVIGGVILLATLLLRR
MARQTRDSIRQWQALLNAQQRQADQQEAWRRMRELLQRDLDEDAFLRALLDTTAEVLGVERAGLWFLDEDRALTCRMSLI
DSLNGLRLPPNGLDGYLASLTYNPCLVTSDAQHDERLAGLRDYLRDNRIQAMLDVGIFVGGELRGAICCESTHPREWQGD
EITSLMGFAGLLSQFSESLRRREVEHDLYRQLHHDEVSDLATLKGLLERLHALIRSHGSFHLLVVRLGGLSHINETLGQQ
AGDEAIRQVAAKLKERLTELQGEILIGRLPANRLLITIPGQTDDSLRRYCLQRLLTLGDGTWRVFGTPCQLRFNIGVTRY
PYDASDIESLLQRAELAVQHARETLPHHLAFYTSQLSDWEHRLSRLERELRTALDAQQLRLYLQGQFDTSGRLAGAEVLL
RWQHPREGLLAPGSFIAEAEHSGLIRPMGQWVLEQACALLGGVLRDSDLTLSVNVSVQQLHDDAFITTLTHLLDRHGFAP
HRLILEVVESLLVTPGVASRLNALRALGIRLALDDFGTGYSSLRYLQDFQVDEIKIDKIFVDAIKERQDAPLVRSIIALG
KALELRVVAEGIESAFQQDYLVTNGVDFLQGYYLARPEPVDAFLRRLDAPSRR

Sequences:

>Translated_693_residues
MAHDGFPLPRPRPVSRMISDIVRRLHHLRSEHRRNIALFCALVAGSGLAVLMSLFFDGSMTGLLIVIGGVILLATLLLRR
MARQTRDSIRQWQALLNAQQRQADQQEAWRRMRELLQRDLDEDAFLRALLDTTAEVLGVERAGLWFLDEDRALTCRMSLI
DSLNGLRLPPNGLDGYLASLTYNPCLVTSDAQHDERLAGLRDYLRDNRIQAMLDVGIFVGGELRGAICCESTHPREWQGD
EITSLMGFAGLLSQFSESLRRREVEHDLYRQLHHDEVSDLATLKGLLERLHALIRSHGSFHLLVVRLGGLSHINETLGQQ
AGDEAIRQVAAKLKERLTELQGEILIGRLPANRLLITIPGQTDDSLRRYCLQRLLTLGDGTWRVFGTPCQLRFNIGVTRY
PYDASDIESLLQRAELAVQHARETLPHHLAFYTSQLSDWEHRLSRLERELRTALDAQQLRLYLQGQFDTSGRLAGAEVLL
RWQHPREGLLAPGSFIAEAEHSGLIRPMGQWVLEQACALLGGVLRDSDLTLSVNVSVQQLHDDAFITTLTHLLDRHGFAP
HRLILEVVESLLVTPGVASRLNALRALGIRLALDDFGTGYSSLRYLQDFQVDEIKIDKIFVDAIKERQDAPLVRSIIALG
KALELRVVAEGIESAFQQDYLVTNGVDFLQGYYLARPEPVDAFLRRLDAPSRR
>Mature_692_residues
AHDGFPLPRPRPVSRMISDIVRRLHHLRSEHRRNIALFCALVAGSGLAVLMSLFFDGSMTGLLIVIGGVILLATLLLRRM
ARQTRDSIRQWQALLNAQQRQADQQEAWRRMRELLQRDLDEDAFLRALLDTTAEVLGVERAGLWFLDEDRALTCRMSLID
SLNGLRLPPNGLDGYLASLTYNPCLVTSDAQHDERLAGLRDYLRDNRIQAMLDVGIFVGGELRGAICCESTHPREWQGDE
ITSLMGFAGLLSQFSESLRRREVEHDLYRQLHHDEVSDLATLKGLLERLHALIRSHGSFHLLVVRLGGLSHINETLGQQA
GDEAIRQVAAKLKERLTELQGEILIGRLPANRLLITIPGQTDDSLRRYCLQRLLTLGDGTWRVFGTPCQLRFNIGVTRYP
YDASDIESLLQRAELAVQHARETLPHHLAFYTSQLSDWEHRLSRLERELRTALDAQQLRLYLQGQFDTSGRLAGAEVLLR
WQHPREGLLAPGSFIAEAEHSGLIRPMGQWVLEQACALLGGVLRDSDLTLSVNVSVQQLHDDAFITTLTHLLDRHGFAPH
RLILEVVESLLVTPGVASRLNALRALGIRLALDDFGTGYSSLRYLQDFQVDEIKIDKIFVDAIKERQDAPLVRSIIALGK
ALELRVVAEGIESAFQQDYLVTNGVDFLQGYYLARPEPVDAFLRRLDAPSRR

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=384, Percent_Identity=32.03125, Blast_Score=185, Evalue=8e-48,
Organism=Escherichia coli, GI226510982, Length=462, Percent_Identity=32.6839826839827, Blast_Score=168, Evalue=1e-42,
Organism=Escherichia coli, GI87081921, Length=389, Percent_Identity=30.0771208226221, Blast_Score=155, Evalue=7e-39,
Organism=Escherichia coli, GI1788502, Length=252, Percent_Identity=36.5079365079365, Blast_Score=155, Evalue=1e-38,
Organism=Escherichia coli, GI1786507, Length=238, Percent_Identity=37.3949579831933, Blast_Score=146, Evalue=3e-36,
Organism=Escherichia coli, GI87081845, Length=248, Percent_Identity=33.4677419354839, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1790496, Length=251, Percent_Identity=32.2709163346614, Blast_Score=132, Evalue=5e-32,
Organism=Escherichia coli, GI87081743, Length=247, Percent_Identity=33.1983805668016, Blast_Score=132, Evalue=8e-32,
Organism=Escherichia coli, GI87081980, Length=254, Percent_Identity=33.8582677165354, Blast_Score=123, Evalue=5e-29,
Organism=Escherichia coli, GI1787055, Length=410, Percent_Identity=25.609756097561, Blast_Score=117, Evalue=4e-27,
Organism=Escherichia coli, GI87082096, Length=246, Percent_Identity=34.1463414634146, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1788849, Length=208, Percent_Identity=29.8076923076923, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI1787410, Length=153, Percent_Identity=26.1437908496732, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 78148; Mature: 78017

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHDGFPLPRPRPVSRMISDIVRRLHHLRSEHRRNIALFCALVAGSGLAVLMSLFFDGSM
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCH
TGLLIVIGGVILLATLLLRRMARQTRDSIRQWQALLNAQQRQADQQEAWRRMRELLQRDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
DEDAFLRALLDTTAEVLGVERAGLWFLDEDRALTCRMSLIDSLNGLRLPPNGLDGYLASL
CHHHHHHHHHHHHHHHHCCHHCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHE
TYNPCLVTSDAQHDERLAGLRDYLRDNRIQAMLDVGIFVGGELRGAICCESTHPREWQGD
ECCCEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCH
EITSLMGFAGLLSQFSESLRRREVEHDLYRQLHHDEVSDLATLKGLLERLHALIRSHGSF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
HLLVVRLGGLSHINETLGQQAGDEAIRQVAAKLKERLTELQGEILIGRLPANRLLITIPG
EEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECC
QTDDSLRRYCLQRLLTLGDGTWRVFGTPCQLRFNIGVTRYPYDASDIESLLQRAELAVQH
CCCHHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCCEECCCCHHHHHHHHHHHHHHHHH
ARETLPHHLAFYTSQLSDWEHRLSRLERELRTALDAQQLRLYLQGQFDTSGRLAGAEVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHE
RWQHPREGLLAPGSFIAEAEHSGLIRPMGQWVLEQACALLGGVLRDSDLTLSVNVSVQQL
EECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
HDDAFITTLTHLLDRHGFAPHRLILEVVESLLVTPGVASRLNALRALGIRLALDDFGTGY
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEHHHCCCCH
SSLRYLQDFQVDEIKIDKIFVDAIKERQDAPLVRSIIALGKALELRVVAEGIESAFQQDY
HHHHHHHCCCCCCEEHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
LVTNGVDFLQGYYLARPEPVDAFLRRLDAPSRR
HHCCCHHHHCCCCCCCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure 
AHDGFPLPRPRPVSRMISDIVRRLHHLRSEHRRNIALFCALVAGSGLAVLMSLFFDGSM
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCH
TGLLIVIGGVILLATLLLRRMARQTRDSIRQWQALLNAQQRQADQQEAWRRMRELLQRDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
DEDAFLRALLDTTAEVLGVERAGLWFLDEDRALTCRMSLIDSLNGLRLPPNGLDGYLASL
CHHHHHHHHHHHHHHHHCCHHCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHE
TYNPCLVTSDAQHDERLAGLRDYLRDNRIQAMLDVGIFVGGELRGAICCESTHPREWQGD
ECCCEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCH
EITSLMGFAGLLSQFSESLRRREVEHDLYRQLHHDEVSDLATLKGLLERLHALIRSHGSF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
HLLVVRLGGLSHINETLGQQAGDEAIRQVAAKLKERLTELQGEILIGRLPANRLLITIPG
EEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECC
QTDDSLRRYCLQRLLTLGDGTWRVFGTPCQLRFNIGVTRYPYDASDIESLLQRAELAVQH
CCCHHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCCEECCCCHHHHHHHHHHHHHHHHH
ARETLPHHLAFYTSQLSDWEHRLSRLERELRTALDAQQLRLYLQGQFDTSGRLAGAEVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHE
RWQHPREGLLAPGSFIAEAEHSGLIRPMGQWVLEQACALLGGVLRDSDLTLSVNVSVQQL
EECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
HDDAFITTLTHLLDRHGFAPHRLILEVVESLLVTPGVASRLNALRALGIRLALDDFGTGY
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEHHHCCCCH
SSLRYLQDFQVDEIKIDKIFVDAIKERQDAPLVRSIIALGKALELRVVAEGIESAFQQDY
HHHHHHHCCCCCCEEHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
LVTNGVDFLQGYYLARPEPVDAFLRRLDAPSRR
HHCCCHHHHCCCCCCCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]