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The map label for this gene is rnfB [H]

Identifier: 92114243

GI number: 92114243

Start: 2390972

End: 2391979

Strand: Direct

Name: rnfB [H]

Synonym: Csal_2121

Alternate gene names: 92114243

Gene position: 2390972-2391979 (Clockwise)

Preceding gene: 92114242

Following gene: 92114244

Centisome position: 64.68

GC content: 70.34

Gene sequence:

>1008_bases
ATGGTGTCCGCTAACGCCGCGCTCATCGAGACGCTGGATGCCGCGCTGCCGCAGACCCAATGCGGCAAGTGCGGGCATCC
CGGCTGTCGTCCCTATGCCGAAGGCATCGCCGCCGGCGAGGCGATCAACAAGTGCCCGCCCGGCGGCGAGGCGACCGTGA
TACGTCTGGCCGAGCTGACCGGCCAGACGCCACAGCCTCTCGCGCAGCCCGCGGAGTCGCCCAAGGTCGCCTTCATTCGC
GAAGCGGAATGCATCGGCTGCACCAAGTGCATCCAGGCATGCCCGGTGGATGCCATCCTCGGCGCGGCCAAGCAGATGCA
CACCGTCATCGCCGGGGAGTGCACCGGCTGCGAGCTGTGCGTCGCGCCCTGCCCGGTCGACTGCATCGACATCCTGCCGC
ACCCCGAATGGGTCGCGGCAGAAACTCGCGCCCAGCAGGACGCCTACCTGACCAGGCGTGCCGAACTGGGCCGGCAACGC
CACGAGGCGCGTCAGCGACGTCTCCAGCGCCAGGCCGAGGAGAAACGCCGCAAGCGCGAACGTCGCCAGGCGGCCCTGGC
GGCAAAGACCACACGCGAGACCGCCCCTGCCAAGCCGACGCCACAGGAGGCCACCGCCGGCGTGGATGCCACGTCTCTCA
AGGCGACGCGCGCCACGCTGGTCGCCGGCCTCAAGCGTGTGGAGCGCCAGCGCCAGCGCGATCCACTGGACGCGGAGACA
CGCCGGGCGCTCGATGAACGCGCCGAGACGCTGACATCGCGCCTGGCGGACATCGACCGGCAGCTCGGCAACGCCCAGAC
AAGGCACGCCGACACCTCCGTTACGCATCATCGGCGCATGGCCGTCAAAGCCGCCGAGCAGTCATTGCGCAAGGCCCGCC
AGCAGGTCGCCCACGCCGAGCGACACGGCGATGCCGCCAGCCGCGAGGCCGCCCACGGCCAGGTCGAAGAGGCCCAGCGC
ATGCTCGATGCTGCCCGTGCCGCCCTCGATTCCTCTTCATCGCCTTGA

Upstream 100 bases:

>100_bases
GGAAGGCATGGTGCTGGCCGCCGGCGACAAGGAGGGCGGCATCTATCTGCTGTCACCGGACAACGGGGCGGAGCCCGGCC
AGCGGGTGTCCTGAGGAGGC

Downstream 100 bases:

>100_bases
TTCGCTCATGAACGCTCAAAAACGCCACGAGATCTTTTCGCGCCTGCGCGACCACAATCCCACGCCGACGACGGAGCTGC
ATTGGCAAACGCCATTCGAG

Product: electron transport complex, RnfABCDGE type subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MVSANAALIETLDAALPQTQCGKCGHPGCRPYAEGIAAGEAINKCPPGGEATVIRLAELTGQTPQPLAQPAESPKVAFIR
EAECIGCTKCIQACPVDAILGAAKQMHTVIAGECTGCELCVAPCPVDCIDILPHPEWVAAETRAQQDAYLTRRAELGRQR
HEARQRRLQRQAEEKRRKRERRQAALAAKTTRETAPAKPTPQEATAGVDATSLKATRATLVAGLKRVERQRQRDPLDAET
RRALDERAETLTSRLADIDRQLGNAQTRHADTSVTHHRRMAVKAAEQSLRKARQQVAHAERHGDAASREAAHGQVEEAQR
MLDAARAALDSSSSP

Sequences:

>Translated_335_residues
MVSANAALIETLDAALPQTQCGKCGHPGCRPYAEGIAAGEAINKCPPGGEATVIRLAELTGQTPQPLAQPAESPKVAFIR
EAECIGCTKCIQACPVDAILGAAKQMHTVIAGECTGCELCVAPCPVDCIDILPHPEWVAAETRAQQDAYLTRRAELGRQR
HEARQRRLQRQAEEKRRKRERRQAALAAKTTRETAPAKPTPQEATAGVDATSLKATRATLVAGLKRVERQRQRDPLDAET
RRALDERAETLTSRLADIDRQLGNAQTRHADTSVTHHRRMAVKAAEQSLRKARQQVAHAERHGDAASREAAHGQVEEAQR
MLDAARAALDSSSSP
>Mature_335_residues
MVSANAALIETLDAALPQTQCGKCGHPGCRPYAEGIAAGEAINKCPPGGEATVIRLAELTGQTPQPLAQPAESPKVAFIR
EAECIGCTKCIQACPVDAILGAAKQMHTVIAGECTGCELCVAPCPVDCIDILPHPEWVAAETRAQQDAYLTRRAELGRQR
HEARQRRLQRQAEEKRRKRERRQAALAAKTTRETAPAKPTPQEATAGVDATSLKATRATLVAGLKRVERQRQRDPLDAET
RRALDERAETLTSRLADIDRQLGNAQTRHADTSVTHHRRMAVKAAEQSLRKARQQVAHAERHGDAASREAAHGQVEEAQR
MLDAARAALDSSSSP

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=131, Percent_Identity=58.7786259541985, Blast_Score=158, Evalue=4e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 36272; Mature: 36272

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSANAALIETLDAALPQTQCGKCGHPGCRPYAEGIAAGEAINKCPPGGEATVIRLAELT
CCCCHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHC
GQTPQPLAQPAESPKVAFIREAECIGCTKCIQACPVDAILGAAKQMHTVIAGECTGCELC
CCCCCHHHCCCCCCCEEEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEE
VAPCPVDCIDILPHPEWVAAETRAQQDAYLTRRAELGRQRHEARQRRLQRQAEEKRRKRE
ECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRQAALAAKTTRETAPAKPTPQEATAGVDATSLKATRATLVAGLKRVERQRQRDPLDAET
HHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
RRALDERAETLTSRLADIDRQLGNAQTRHADTSVTHHRRMAVKAAEQSLRKARQQVAHAE
HHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RHGDAASREAAHGQVEEAQRMLDAARAALDSSSSP
HCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MVSANAALIETLDAALPQTQCGKCGHPGCRPYAEGIAAGEAINKCPPGGEATVIRLAELT
CCCCHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHC
GQTPQPLAQPAESPKVAFIREAECIGCTKCIQACPVDAILGAAKQMHTVIAGECTGCELC
CCCCCHHHCCCCCCCEEEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEE
VAPCPVDCIDILPHPEWVAAETRAQQDAYLTRRAELGRQRHEARQRRLQRQAEEKRRKRE
ECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRQAALAAKTTRETAPAKPTPQEATAGVDATSLKATRATLVAGLKRVERQRQRDPLDAET
HHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
RRALDERAETLTSRLADIDRQLGNAQTRHADTSVTHHRRMAVKAAEQSLRKARQQVAHAE
HHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RHGDAASREAAHGQVEEAQRMLDAARAALDSSSSP
HCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA