Click here to switch to the map view.

The map label for this gene is yhdW [H]

Identifier: 92114183

GI number: 92114183

Start: 2328594

End: 2330408

Strand: Direct

Name: yhdW [H]

Synonym: Csal_2061

Alternate gene names: 92114183

Gene position: 2328594-2330408 (Clockwise)

Preceding gene: 92114182

Following gene: 92114185

Centisome position: 62.99

GC content: 65.51

Gene sequence:

>1815_bases
ATGCTCGCCACCCGCACGCTGCTGGGTGACATTGCCTCGCAATTGCGCGCCCAGGGACGGGCGCTGCTGGTCTTCCACCT
GTTCTTCACCGTCCTGGCCACGGCAGTTCTGGTACCGCTGACGACCTGGACCCTGGCCGGCCTGCTGCATGCCTTCCAAC
AGCCGGCGCTCAGCAACGCTCAGATCGCCGAGATGGCGCTGTCGCCGCTGGGCCTGGCGTGGGGCCTGGTGGCGCTGGGC
CTGAGTTTCCTGCTGATATTCCTGCAGCAGGCCGGCATGATGCGCTTGCTCGCCCTCTCCGGCTCGGGACGCTATCACGC
ATCGATGAATGCGTTGTGGCAAACCGGCAAGCGCTTGCCGGGCATTGCCGGGCTCACCTTTCTGCAGGTCGGCGCGCATC
TGCTACTGCTCGTCCCCTTCGCGCTGCTCATCGCCACGGCCTATGACCTTCTTCTGGGCGAAGCCGAGTTGTACGTGGTC
ATGCGCCTGAAGCCGCCGGCCTTCTGGTACTTCGCATCGATCGGGGGCAGCCTGGGCGCCATCGCGCTGTGGTTGCAGGC
CTGGCTCTATGCGCGCTGGTTCCTGGCGCTTCCGGCGCTGGTGCTGGACCGGCTCACTCCCGTTCAATCCCTGGCGCGCA
GCCGCGAACTGACCCGGGGCCGTCATGCCCGCATCACGGCCCTGGCACTGGCCTTCGCGTTCGGTGTGGCGGCCTTTCCC
ATCGCCTTCAGCCTGCTCTTCAATGCCCTCGCGATGCCGTTGATCGAGCACCTGCCGGATCGTATGTCGCTTCTGATTCC
CGTCATGCTGATCTATGTGGCGGTATACAGCGTGCTGATCATCGCCATGACCTTCCTGGGGGTCGCAGCCAACAGCCTGC
TGGTGATCAACCTCTACCACCGCCTCGGCGGCAGCACACTGGCGCTCGATGACCTTCCCGCACCGGCACGTTCGGGCTGG
TGGGCCTGGACGGCGGAAGCCGTGCTGCTGATCTTCGCGCTGGTGCAAGCCGGCTGGGTCCTGAGTGACTTTCAACTGCG
CGACGACGTGCGCGTCACCGCCCATCGCGGCAGCTCGATCGCCGCCCCCGAGAACACCCTGGCCGCCATGCGCCGGGCCA
TTCAGGAAGGCGCCGACTACCTGGAGATCGATGTCAGACAACTGCGCGACGGCAACGTCGTGCTCTCCCACGACCGCAAC
CTGAAGCGCCTGACCGGCCGGGACCTGGACATCACCGACCTCACGCTGGCGGAAACCCGCGACATCGACATCGGAAGCTG
GTTCGACGACGCCTTTGCCGACGAGCGCCTGGCGACCCTCGACCAGGTGATCGGGCTGGCGCACGGCAAGGCACGCCTTT
ACGTCGAGCTCAAGCCCGCCCCCGGCAACGAAACCGATCTCATCGAGGCCGTCGTCGAACGCTTGCGGCATCATGGCATC
GCCGACAGCGCGGTGGTCGCCTCGCTTTCTCCGACGATCATCCGCGATGTCGAGGCATACGCTCCCGACATCGACACCAC
GCTGTTCGTTCAATTCCTGTTGCCCGGCGCGCTGGCCGCGACGCCTGCCGACAACATCGGACTGCGGCATACCCAGGCCA
ATACCGATGTCGTGCGTCTGGTTCAGAACAGCGGCCGTGAGCTGCATGTATGGACCGTCAACGACCCGCGCGAGATGTCA
CGCTACATCGACATGGGCGTCGACAACATCATCACCGACCGCCCCGCGACATTGATCGACCTGCTCACCGAACGCGCCAC
GCTGAGCGACGGCGAGCTGCTGCTGGTCAAGCTGCGCAACTGGCTGCACCACTGA

Upstream 100 bases:

>100_bases
ATCGGAGGAGTTGACGCTAGACGGTTGATAGCAAGCGAGTTGCCAGCGGCGCAAGACGATGCGAGGCTGACGGCGCCGCA
GCTCGAACCAAGGAGTCGTC

Downstream 100 bases:

>100_bases
AGTATCGCCCGAAAAACGAAAAAGGCGCGCCCGTCATCGGGCGCGCCTGATACCGCATGGCGATGCATCGTACGCTCGGG
ATCGCGTCAGCCGAGCTTTT

Product: glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 604; Mature: 604

Protein sequence:

>604_residues
MLATRTLLGDIASQLRAQGRALLVFHLFFTVLATAVLVPLTTWTLAGLLHAFQQPALSNAQIAEMALSPLGLAWGLVALG
LSFLLIFLQQAGMMRLLALSGSGRYHASMNALWQTGKRLPGIAGLTFLQVGAHLLLLVPFALLIATAYDLLLGEAELYVV
MRLKPPAFWYFASIGGSLGAIALWLQAWLYARWFLALPALVLDRLTPVQSLARSRELTRGRHARITALALAFAFGVAAFP
IAFSLLFNALAMPLIEHLPDRMSLLIPVMLIYVAVYSVLIIAMTFLGVAANSLLVINLYHRLGGSTLALDDLPAPARSGW
WAWTAEAVLLIFALVQAGWVLSDFQLRDDVRVTAHRGSSIAAPENTLAAMRRAIQEGADYLEIDVRQLRDGNVVLSHDRN
LKRLTGRDLDITDLTLAETRDIDIGSWFDDAFADERLATLDQVIGLAHGKARLYVELKPAPGNETDLIEAVVERLRHHGI
ADSAVVASLSPTIIRDVEAYAPDIDTTLFVQFLLPGALAATPADNIGLRHTQANTDVVRLVQNSGRELHVWTVNDPREMS
RYIDMGVDNIITDRPATLIDLLTERATLSDGELLLVKLRNWLHH

Sequences:

>Translated_604_residues
MLATRTLLGDIASQLRAQGRALLVFHLFFTVLATAVLVPLTTWTLAGLLHAFQQPALSNAQIAEMALSPLGLAWGLVALG
LSFLLIFLQQAGMMRLLALSGSGRYHASMNALWQTGKRLPGIAGLTFLQVGAHLLLLVPFALLIATAYDLLLGEAELYVV
MRLKPPAFWYFASIGGSLGAIALWLQAWLYARWFLALPALVLDRLTPVQSLARSRELTRGRHARITALALAFAFGVAAFP
IAFSLLFNALAMPLIEHLPDRMSLLIPVMLIYVAVYSVLIIAMTFLGVAANSLLVINLYHRLGGSTLALDDLPAPARSGW
WAWTAEAVLLIFALVQAGWVLSDFQLRDDVRVTAHRGSSIAAPENTLAAMRRAIQEGADYLEIDVRQLRDGNVVLSHDRN
LKRLTGRDLDITDLTLAETRDIDIGSWFDDAFADERLATLDQVIGLAHGKARLYVELKPAPGNETDLIEAVVERLRHHGI
ADSAVVASLSPTIIRDVEAYAPDIDTTLFVQFLLPGALAATPADNIGLRHTQANTDVVRLVQNSGRELHVWTVNDPREMS
RYIDMGVDNIITDRPATLIDLLTERATLSDGELLLVKLRNWLHH
>Mature_604_residues
MLATRTLLGDIASQLRAQGRALLVFHLFFTVLATAVLVPLTTWTLAGLLHAFQQPALSNAQIAEMALSPLGLAWGLVALG
LSFLLIFLQQAGMMRLLALSGSGRYHASMNALWQTGKRLPGIAGLTFLQVGAHLLLLVPFALLIATAYDLLLGEAELYVV
MRLKPPAFWYFASIGGSLGAIALWLQAWLYARWFLALPALVLDRLTPVQSLARSRELTRGRHARITALALAFAFGVAAFP
IAFSLLFNALAMPLIEHLPDRMSLLIPVMLIYVAVYSVLIIAMTFLGVAANSLLVINLYHRLGGSTLALDDLPAPARSGW
WAWTAEAVLLIFALVQAGWVLSDFQLRDDVRVTAHRGSSIAAPENTLAAMRRAIQEGADYLEIDVRQLRDGNVVLSHDRN
LKRLTGRDLDITDLTLAETRDIDIGSWFDDAFADERLATLDQVIGLAHGKARLYVELKPAPGNETDLIEAVVERLRHHGI
ADSAVVASLSPTIIRDVEAYAPDIDTTLFVQFLLPGALAATPADNIGLRHTQANTDVVRLVQNSGRELHVWTVNDPREMS
RYIDMGVDNIITDRPATLIDLLTERATLSDGELLLVKLRNWLHH

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=180, Percent_Identity=28.3333333333333, Blast_Score=73, Evalue=1e-12,
Organism=Escherichia coli, GI1789858, Length=232, Percent_Identity=28.0172413793103, Blast_Score=77, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17542344, Length=155, Percent_Identity=27.741935483871, Blast_Score=70, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 66235; Mature: 66235

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLATRTLLGDIASQLRAQGRALLVFHLFFTVLATAVLVPLTTWTLAGLLHAFQQPALSNA
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
QIAEMALSPLGLAWGLVALGLSFLLIFLQQAGMMRLLALSGSGRYHASMNALWQTGKRLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCCCHHHHHHHHHCCCCCC
GIAGLTFLQVGAHLLLLVPFALLIATAYDLLLGEAELYVVMRLKPPAFWYFASIGGSLGA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHCCHHHH
IALWLQAWLYARWFLALPALVLDRLTPVQSLARSRELTRGRHARITALALAFAFGVAAFP
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
IAFSLLFNALAMPLIEHLPDRMSLLIPVMLIYVAVYSVLIIAMTFLGVAANSLLVINLYH
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHH
RLGGSTLALDDLPAPARSGWWAWTAEAVLLIFALVQAGWVLSDFQLRDDVRVTAHRGSSI
HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEECCCCEEEEECCCCC
AAPENTLAAMRRAIQEGADYLEIDVRQLRDGNVVLSHDRNLKRLTGRDLDITDLTLAETR
CCCHHHHHHHHHHHHCCCCEEEHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCEEHHCCC
DIDIGSWFDDAFADERLATLDQVIGLAHGKARLYVELKPAPGNETDLIEAVVERLRHHGI
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCC
ADSAVVASLSPTIIRDVEAYAPDIDTTLFVQFLLPGALAATPADNIGLRHTQANTDVVRL
CCHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHCCHHHCCCCCCCCCEEECCCHHHHHH
VQNSGRELHVWTVNDPREMSRYIDMGVDNIITDRPATLIDLLTERATLSDGELLLVKLRN
HHCCCCEEEEEECCCHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHH
WLHH
HHCC
>Mature Secondary Structure
MLATRTLLGDIASQLRAQGRALLVFHLFFTVLATAVLVPLTTWTLAGLLHAFQQPALSNA
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
QIAEMALSPLGLAWGLVALGLSFLLIFLQQAGMMRLLALSGSGRYHASMNALWQTGKRLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCCCHHHHHHHHHCCCCCC
GIAGLTFLQVGAHLLLLVPFALLIATAYDLLLGEAELYVVMRLKPPAFWYFASIGGSLGA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHCCHHHH
IALWLQAWLYARWFLALPALVLDRLTPVQSLARSRELTRGRHARITALALAFAFGVAAFP
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
IAFSLLFNALAMPLIEHLPDRMSLLIPVMLIYVAVYSVLIIAMTFLGVAANSLLVINLYH
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHH
RLGGSTLALDDLPAPARSGWWAWTAEAVLLIFALVQAGWVLSDFQLRDDVRVTAHRGSSI
HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEECCCCEEEEECCCCC
AAPENTLAAMRRAIQEGADYLEIDVRQLRDGNVVLSHDRNLKRLTGRDLDITDLTLAETR
CCCHHHHHHHHHHHHCCCCEEEHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCEEHHCCC
DIDIGSWFDDAFADERLATLDQVIGLAHGKARLYVELKPAPGNETDLIEAVVERLRHHGI
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCC
ADSAVVASLSPTIIRDVEAYAPDIDTTLFVQFLLPGALAATPADNIGLRHTQANTDVVRL
CCHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHCCHHHCCCCCCCCCEEECCCHHHHHH
VQNSGRELHVWTVNDPREMSRYIDMGVDNIITDRPATLIDLLTERATLSDGELLLVKLRN
HHCCCCEEEEEECCCHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHH
WLHH
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]