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The map label for this gene is rraA [C]

Identifier: 92114182

GI number: 92114182

Start: 2328030

End: 2328521

Strand: Direct

Name: rraA [C]

Synonym: Csal_2060

Alternate gene names: 92114182

Gene position: 2328030-2328521 (Clockwise)

Preceding gene: 92114181

Following gene: 92114183

Centisome position: 62.98

GC content: 65.65

Gene sequence:

>492_bases
ATGCCTTCCATGATCGTCACGCCCGATATCTGCGATGCCTACCCGGACGTCAAGGTTCTCGAACCGTTGTTTTTGAACCT
CGGCGGCCCCGATGCCTTCTACGGCCCGGTCCGCACGGTCAAGTGCTTCGAGGACAACTCGCGCGTCAAGGAAGCCGTCG
GCGAACCCGGCGATGGAGCCGTGCTGGTGGTCGACGGCGGCGGCTCGCTGCGTTGCGCCCTGCTCGGCGACATGCTCGCC
GCCAAGGCCGCCGACAATGGCTGGGCCGGCATTGTCGTCTATGGCTGCGTGCGCGACGTCGACGTGCTCAACGACACCGC
CCTGGGGGTGCAAGCCATCGGCACCCATCCCCGCAGGAGTGAAAAGCGCGGCGAAGGGCAGCGTGACGTGACGGTCACCT
TCGCCGGCGTCACGATTGCGCCGGGGCAGTGGCTCTACGCCGACAACAACGGCATCGTGGTTGCATCGGAGGAGTTGACG
CTAGACGGTTGA

Upstream 100 bases:

>100_bases
TTTACTAGCGGTCATTCCCCCAAGGCAGCACTGGCCTGCCGCCCTTGGCGTGGCATGATGGCATCTACGCTTTCCCGACG
ACTAACCGCAAGGAGACAAC

Downstream 100 bases:

>100_bases
TAGCAAGCGAGTTGCCAGCGGCGCAAGACGATGCGAGGCTGACGGCGCCGCAGCTCGAACCAAGGAGTCGTCATGCTCGC
CACCCGCACGCTGCTGGGTG

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MPSMIVTPDICDAYPDVKVLEPLFLNLGGPDAFYGPVRTVKCFEDNSRVKEAVGEPGDGAVLVVDGGGSLRCALLGDMLA
AKAADNGWAGIVVYGCVRDVDVLNDTALGVQAIGTHPRRSEKRGEGQRDVTVTFAGVTIAPGQWLYADNNGIVVASEELT
LDG

Sequences:

>Translated_163_residues
MPSMIVTPDICDAYPDVKVLEPLFLNLGGPDAFYGPVRTVKCFEDNSRVKEAVGEPGDGAVLVVDGGGSLRCALLGDMLA
AKAADNGWAGIVVYGCVRDVDVLNDTALGVQAIGTHPRRSEKRGEGQRDVTVTFAGVTIAPGQWLYADNNGIVVASEELT
LDG
>Mature_162_residues
PSMIVTPDICDAYPDVKVLEPLFLNLGGPDAFYGPVRTVKCFEDNSRVKEAVGEPGDGAVLVVDGGGSLRCALLGDMLAA
KAADNGWAGIVVYGCVRDVDVLNDTALGVQAIGTHPRRSEKRGEGQRDVTVTFAGVTIAPGQWLYADNNGIVVASEELTL
DG

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

Organism=Escherichia coli, GI1790364, Length=157, Percent_Identity=47.1337579617834, Blast_Score=137, Evalue=3e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493
- InterPro:   IPR010203 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 17093; Mature: 16961

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSMIVTPDICDAYPDVKVLEPLFLNLGGPDAFYGPVRTVKCFEDNSRVKEAVGEPGDGA
CCCEEECCHHHCCCCCHHCCCHHEEECCCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCE
VLVVDGGGSLRCALLGDMLAAKAADNGWAGIVVYGCVRDVDVLNDTALGVQAIGTHPRRS
EEEEECCCCEEEEEHHHHHHHHCCCCCCEEEEEEEEECCCHHCCCCCCCEEEECCCCCCC
EKRGEGQRDVTVTFAGVTIAPGQWLYADNNGIVVASEELTLDG
CCCCCCCCEEEEEEEEEEECCCCEEEECCCCEEEEECCEEECC
>Mature Secondary Structure 
PSMIVTPDICDAYPDVKVLEPLFLNLGGPDAFYGPVRTVKCFEDNSRVKEAVGEPGDGA
CCEEECCHHHCCCCCHHCCCHHEEECCCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCE
VLVVDGGGSLRCALLGDMLAAKAADNGWAGIVVYGCVRDVDVLNDTALGVQAIGTHPRRS
EEEEECCCCEEEEEHHHHHHHHCCCCCCEEEEEEEEECCCHHCCCCCCCEEEECCCCCCC
EKRGEGQRDVTVTFAGVTIAPGQWLYADNNGIVVASEELTLDG
CCCCCCCCEEEEEEEEEEECCCCEEEECCCCEEEEECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA