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The map label for this gene is hlyU [H]

Identifier: 92114060

GI number: 92114060

Start: 2194426

End: 2194749

Strand: Direct

Name: hlyU [H]

Synonym: Csal_1937

Alternate gene names: 92114060

Gene position: 2194426-2194749 (Clockwise)

Preceding gene: 92114057

Following gene: 92114062

Centisome position: 59.36

GC content: 63.89

Gene sequence:

>324_bases
ATGCGCTCGCTCCAGCCTGCCTCCACCCTGCTCAACGCCGGTACTTCCGCGATCGACAAGGGCACGACCCTGCTCAAGGC
CATGGCCAACGAGAACCGGCTGCGCATTCTGTGCCTGCTCGACGACGCGGAACTCTCGGTCACCGAGCTGAACCGCAAGC
TGAGCCTCAGCCAGTCCGCGCTGTCGCAGCATCTTGCGATCCTGCGTCGCGAAAACCTCGTCGTGACACGTCGAGCCTCG
CAGACGATCTACTATTCACTGGCCGGCGACGAGGCGCGCACGGTCATCGACGCCCTCGTCGCGCTTTACAGCAAGACCCG
CTAA

Upstream 100 bases:

>100_bases
CCCGTAAAGCCCACCAGAACGTATCCCTCGCCGTTGGGCGCTCATCCCACGCTCGCGGCGACCCATCGCCAATCCCGATA
ATGATGTAGGAGACACCCAC

Downstream 100 bases:

>100_bases
GCCGTGTGCGGCTGGCAGCGGCCTACCGCCGCTGCCAGCCGCTTTCCTCCAGGCGTTCCATGACACGATCGCTCAAGCGC
TCGATGCCCTGCGAAGCGCC

Product: ArsR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MRSLQPASTLLNAGTSAIDKGTTLLKAMANENRLRILCLLDDAELSVTELNRKLSLSQSALSQHLAILRRENLVVTRRAS
QTIYYSLAGDEARTVIDALVALYSKTR

Sequences:

>Translated_107_residues
MRSLQPASTLLNAGTSAIDKGTTLLKAMANENRLRILCLLDDAELSVTELNRKLSLSQSALSQHLAILRRENLVVTRRAS
QTIYYSLAGDEARTVIDALVALYSKTR
>Mature_107_residues
MRSLQPASTLLNAGTSAIDKGTTLLKAMANENRLRILCLLDDAELSVTELNRKLSLSQSALSQHLAILRRENLVVTRRAS
QTIYYSLAGDEARTVIDALVALYSKTR

Specific function: Up-regulates the expression of the hemolysin gene, hlyA, and may promote expression of other virulence determinants in vivo. It may have both positive and negative regulator activities [H]

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789021, Length=86, Percent_Identity=40.6976744186046, Blast_Score=59, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 11774; Mature: 11774

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSLQPASTLLNAGTSAIDKGTTLLKAMANENRLRILCLLDDAELSVTELNRKLSLSQSA
CCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH
LSQHLAILRRENLVVTRRASQTIYYSLAGDEARTVIDALVALYSKTR
HHHHHHHHHHCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRSLQPASTLLNAGTSAIDKGTTLLKAMANENRLRILCLLDDAELSVTELNRKLSLSQSA
CCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH
LSQHLAILRRENLVVTRRASQTIYYSLAGDEARTVIDALVALYSKTR
HHHHHHHHHHCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8231807; 9457888; 10952301 [H]