Click here to switch to the map view.

The map label for this gene is yadH [H]

Identifier: 92113478

GI number: 92113478

Start: 1550482

End: 1551255

Strand: Direct

Name: yadH [H]

Synonym: Csal_1352

Alternate gene names: 92113478

Gene position: 1550482-1551255 (Clockwise)

Preceding gene: 92113477

Following gene: 92113479

Centisome position: 41.94

GC content: 59.69

Gene sequence:

>774_bases
ATGAATGCCTGGCAGACCTGGATCGCGCTTTGGACCCTGGTGACCAAGGAAGTGCGCCGCTACATGCGCATCTGGCCGCA
GACGCTGCTGCCGCCTTCGATCACCATGACCATGTACTTCATCATCTTCGGCAACCTGATCGGCTCGCGCATCGGGCCTA
TGGACGATATCCCCTACATCGATTACATCGTGCCCGGTCTGATCATGATGGCGGTGATCACCAACAGCTACTCCAACGTG
GCCTCGAGCTTCTTCTCCAACAAGTTCCAGCGCAGCGTCGAGGAGATGATGGTCTCGCCGATGCCCAACTGGGTGATTCT
CGCCGGTTTCGTGATCGGCGGTGCATCGCGCGGCCTGGCCGTGGGCTTGATCGTCACCGTGGTCTCGATGTTCTTCACCG
ACCTCTCGATTCACCATCCTTGGGTGACCATCGGGGTGGTGATCATGACGGCGTTGCTGTTTTCCATCGGCGGGTTCATC
AATGCCCTGGTGGCACACAAGTTCGACGACATCTCGATCGTGCCGATCTTCGTGCTGACGCCGCTCACCTATCTGGGCGG
GGTGTTCTACTCGATCAACATGCTGCCGGACTTCTGGCAGGGCGTGTCGATGGTCAATCCCATTCTGTACATGGTCAACG
CCTTCCGCTACGGCATTCTCGGGGTCTCGGACATCCCGGTCGGCGGAGCGCTGGTGGCCATCGCGATCTTCATCGTCGTG
TTCTTCGCGGTGGGGCTGTGGATGCTCGACCGCGGCAAGGGGATCCGGAGCTGA

Upstream 100 bases:

>100_bases
TGCGCAATCGCGCCAACCGCCTGGAGGAAATGTTCGTGTCGATGGTCGAGCACGCCAATGCCGAAAGCGGCCGGTCCACC
GACAAGGTGGAGGTGCGCTC

Downstream 100 bases:

>100_bases
CATGAGCGAACGTGACAAAACCCTCGAGCATGCGCCGCTGGGTCGCGAGTCCGCGTATCCCGAACACTACGACGCCGGCC
TGCTGTTTCCCATTCCCCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MNAWQTWIALWTLVTKEVRRYMRIWPQTLLPPSITMTMYFIIFGNLIGSRIGPMDDIPYIDYIVPGLIMMAVITNSYSNV
ASSFFSNKFQRSVEEMMVSPMPNWVILAGFVIGGASRGLAVGLIVTVVSMFFTDLSIHHPWVTIGVVIMTALLFSIGGFI
NALVAHKFDDISIVPIFVLTPLTYLGGVFYSINMLPDFWQGVSMVNPILYMVNAFRYGILGVSDIPVGGALVAIAIFIVV
FFAVGLWMLDRGKGIRS

Sequences:

>Translated_257_residues
MNAWQTWIALWTLVTKEVRRYMRIWPQTLLPPSITMTMYFIIFGNLIGSRIGPMDDIPYIDYIVPGLIMMAVITNSYSNV
ASSFFSNKFQRSVEEMMVSPMPNWVILAGFVIGGASRGLAVGLIVTVVSMFFTDLSIHHPWVTIGVVIMTALLFSIGGFI
NALVAHKFDDISIVPIFVLTPLTYLGGVFYSINMLPDFWQGVSMVNPILYMVNAFRYGILGVSDIPVGGALVAIAIFIVV
FFAVGLWMLDRGKGIRS
>Mature_257_residues
MNAWQTWIALWTLVTKEVRRYMRIWPQTLLPPSITMTMYFIIFGNLIGSRIGPMDDIPYIDYIVPGLIMMAVITNSYSNV
ASSFFSNKFQRSVEEMMVSPMPNWVILAGFVIGGASRGLAVGLIVTVVSMFFTDLSIHHPWVTIGVVIMTALLFSIGGFI
NALVAHKFDDISIVPIFVLTPLTYLGGVFYSINMLPDFWQGVSMVNPILYMVNAFRYGILGVSDIPVGGALVAIAIFIVV
FFAVGLWMLDRGKGIRS

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=252, Percent_Identity=56.7460317460317, Blast_Score=300, Evalue=6e-83,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 28567; Mature: 28567

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.2 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]