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The map label for this gene is ydcR [C]

Identifier: 92113217

GI number: 92113217

Start: 1232194

End: 1233525

Strand: Direct

Name: ydcR [C]

Synonym: Csal_1090

Alternate gene names: 92113217

Gene position: 1232194-1233525 (Clockwise)

Preceding gene: 92113210

Following gene: 92113218

Centisome position: 33.33

GC content: 44.07

Gene sequence:

>1332_bases
ATGGGAAAAGCTCAGCAATATATTGATTTGGCTAGAAAAATTGAAAGCATGATTTCGGATGGTTCATTGCCACCTGGTAG
CCGCCTACCCACGCATCGGGATGTTGCGGAAAAGCATGGTGTGGCTCTTGCCACTGCTACCCGGGCGTATAAATTGCTTA
TAAGCAAAGGTTTGATCATAGGTGAACGTGGTCGTGGCATGTTCGTACGCCACCAAGGGCACCCCCTACCACGAGGCTTC
GAGCAGGTTTCACCCGATGGTTTTATTGATCTGACATTGAATATGCCCGGTAATACTTCTGATTCTGACCTCCTGAGGAG
TGTGCTTCGCAAGATAAGTGCCAAAGGAGATTTGGAATCAATGCTGCGGTATCAGCCTCATGTAGGAAGAGCTGAAGAGA
GACTGGTTATTGCTAATTACGCTCGAAGGTTAGCAGGTGATTTTGATCCTGAGAGATTGTTAATAACTTCCGGCGGCCAG
CATGGTCTTTTTGTCTCTCTGCTATCAGTGTTTAACCGGGGTGACACCATCGCGGTTGACCCCTTGACTTATCCGGGGTT
TATTACAGCCAGCTCTTTACTTAGCAACCCCCTTTTTTCATTTAGTAAGGAAGGGTCAGCAATAGATCTTGATCACTTCG
AAGATGCTATTGTTCGAAAAAGAATAAAAGGTATGTATTTGATCCCCACTGTACATAACCCTTTGGGTTATGTGATGTCT
AAAGAAGAGCGGGATGCCGTTGTTTACCTTTCCAGGAAATATGGGTTGACTATTATTGAGGATATGGCGTATGCATTTTT
AGAGCCTGACGCTCCACCAAGCTTTTCAGAGATTGCTCCTGAAGTAACTGTTCAGGTAGGAAGTTTTTCGAAAAATATAG
CCACAGGGCTTAGGGTAGGATATTTAATTTCTCCAGAAAAGCATGTAAGTAAGCTAGCCTCTTCCATCAAAGCTTCCACT
TGGAATACGCCATCGTTGATGGCTGCTATTGTTACCAACTGGATTGAGGATGGAACCATCAATAGTATTGAGAAGGCTCG
AAAGGATGATGGAGCTTCCAAGCAGTTAGCATGTAAGGAGGTTCTAGGAGAGTTTGATATACAGGCACACTCTAATGCAA
ACTACTTGTGGTTGAGACTTCATAATAAAGTACGTGCTGAAAAAATTATGTCCAAGCTCCTGGAGAGAGATGTGGTGGTT
TCAACTGCTGAACCTTTTTGTACTACTGATGCCGTCCCTCAAGCACTTAGGATTGCTTTTGGTGGTATTCCAGATGGCGT
GTTTGATGAAGCTATTAATGCGATACGTGATACTTTGAAGTGTTATTCGTAG

Upstream 100 bases:

>100_bases
TTTACGGTTCATGGCTGCCTCTTTTTTTAACCTTAAGGGATTGTTAGCACGTGGCACAAAGCAGTACAATATTTTTATTG
TACTAATTACAGAGGTTTCC

Downstream 100 bases:

>100_bases
CGCTGTAGATTCTAAGCTAATTGCTGAGGGCTTTGGGAGAATTGTTTTCCCCTGTTAGCTTGGGCGTCTACTTATGGGGT
GTAGCAGGTGTAAGCTTTGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MGKAQQYIDLARKIESMISDGSLPPGSRLPTHRDVAEKHGVALATATRAYKLLISKGLIIGERGRGMFVRHQGHPLPRGF
EQVSPDGFIDLTLNMPGNTSDSDLLRSVLRKISAKGDLESMLRYQPHVGRAEERLVIANYARRLAGDFDPERLLITSGGQ
HGLFVSLLSVFNRGDTIAVDPLTYPGFITASSLLSNPLFSFSKEGSAIDLDHFEDAIVRKRIKGMYLIPTVHNPLGYVMS
KEERDAVVYLSRKYGLTIIEDMAYAFLEPDAPPSFSEIAPEVTVQVGSFSKNIATGLRVGYLISPEKHVSKLASSIKAST
WNTPSLMAAIVTNWIEDGTINSIEKARKDDGASKQLACKEVLGEFDIQAHSNANYLWLRLHNKVRAEKIMSKLLERDVVV
STAEPFCTTDAVPQALRIAFGGIPDGVFDEAINAIRDTLKCYS

Sequences:

>Translated_443_residues
MGKAQQYIDLARKIESMISDGSLPPGSRLPTHRDVAEKHGVALATATRAYKLLISKGLIIGERGRGMFVRHQGHPLPRGF
EQVSPDGFIDLTLNMPGNTSDSDLLRSVLRKISAKGDLESMLRYQPHVGRAEERLVIANYARRLAGDFDPERLLITSGGQ
HGLFVSLLSVFNRGDTIAVDPLTYPGFITASSLLSNPLFSFSKEGSAIDLDHFEDAIVRKRIKGMYLIPTVHNPLGYVMS
KEERDAVVYLSRKYGLTIIEDMAYAFLEPDAPPSFSEIAPEVTVQVGSFSKNIATGLRVGYLISPEKHVSKLASSIKAST
WNTPSLMAAIVTNWIEDGTINSIEKARKDDGASKQLACKEVLGEFDIQAHSNANYLWLRLHNKVRAEKIMSKLLERDVVV
STAEPFCTTDAVPQALRIAFGGIPDGVFDEAINAIRDTLKCYS
>Mature_442_residues
GKAQQYIDLARKIESMISDGSLPPGSRLPTHRDVAEKHGVALATATRAYKLLISKGLIIGERGRGMFVRHQGHPLPRGFE
QVSPDGFIDLTLNMPGNTSDSDLLRSVLRKISAKGDLESMLRYQPHVGRAEERLVIANYARRLAGDFDPERLLITSGGQH
GLFVSLLSVFNRGDTIAVDPLTYPGFITASSLLSNPLFSFSKEGSAIDLDHFEDAIVRKRIKGMYLIPTVHNPLGYVMSK
EERDAVVYLSRKYGLTIIEDMAYAFLEPDAPPSFSEIAPEVTVQVGSFSKNIATGLRVGYLISPEKHVSKLASSIKASTW
NTPSLMAAIVTNWIEDGTINSIEKARKDDGASKQLACKEVLGEFDIQAHSNANYLWLRLHNKVRAEKIMSKLLERDVVVS
TAEPFCTTDAVPQALRIAFGGIPDGVFDEAINAIRDTLKCYS

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=315, Percent_Identity=24.7619047619048, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI33469970, Length=315, Percent_Identity=24.7619047619048, Blast_Score=88, Evalue=2e-17,
Organism=Escherichia coli, GI1787710, Length=438, Percent_Identity=25.3424657534247, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1790797, Length=459, Percent_Identity=24.400871459695, Blast_Score=116, Evalue=3e-27,
Organism=Saccharomyces cerevisiae, GI6322401, Length=256, Percent_Identity=27.34375, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21356535, Length=359, Percent_Identity=22.2841225626741, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 48732; Mature: 48601

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: PS50949 HTH_GNTR ; PS00626 RCC1_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKAQQYIDLARKIESMISDGSLPPGSRLPTHRDVAEKHGVALATATRAYKLLISKGLII
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCEEEEHHHHHHHHHHHCCCEE
GERGRGMFVRHQGHPLPRGFEQVSPDGFIDLTLNMPGNTSDSDLLRSVLRKISAKGDLES
ECCCCEEEEEECCCCCCCCHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHH
MLRYQPHVGRAEERLVIANYARRLAGDFDPERLLITSGGQHGLFVSLLSVFNRGDTIAVD
HHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEC
PLTYPGFITASSLLSNPLFSFSKEGSAIDLDHFEDAIVRKRIKGMYLIPTVHNPLGYVMS
CCCCCCHHHHHHHHCCHHHHHCCCCCEEEHHHHHHHHHHHHHCCEEEEEECCCCHHHHHC
KEERDAVVYLSRKYGLTIIEDMAYAFLEPDAPPSFSEIAPEVTVQVGSFSKNIATGLRVG
CCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCHHHCCCEEEEEECCCHHHHHHHHHEE
YLISPEKHVSKLASSIKASTWNTPSLMAAIVTNWIEDGTINSIEKARKDDGASKQLACKE
EEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHH
VLGEFDIQAHSNANYLWLRLHNKVRAEKIMSKLLERDVVVSTAEPFCTTDAVPQALRIAF
HHCCCCCEECCCCCEEEEEECCHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHH
GGIPDGVFDEAINAIRDTLKCYS
CCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GKAQQYIDLARKIESMISDGSLPPGSRLPTHRDVAEKHGVALATATRAYKLLISKGLII
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCEEEEHHHHHHHHHHHCCCEE
GERGRGMFVRHQGHPLPRGFEQVSPDGFIDLTLNMPGNTSDSDLLRSVLRKISAKGDLES
ECCCCEEEEEECCCCCCCCHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHH
MLRYQPHVGRAEERLVIANYARRLAGDFDPERLLITSGGQHGLFVSLLSVFNRGDTIAVD
HHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEC
PLTYPGFITASSLLSNPLFSFSKEGSAIDLDHFEDAIVRKRIKGMYLIPTVHNPLGYVMS
CCCCCCHHHHHHHHCCHHHHHCCCCCEEEHHHHHHHHHHHHHCCEEEEEECCCCHHHHHC
KEERDAVVYLSRKYGLTIIEDMAYAFLEPDAPPSFSEIAPEVTVQVGSFSKNIATGLRVG
CCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCHHHCCCEEEEEECCCHHHHHHHHHEE
YLISPEKHVSKLASSIKASTWNTPSLMAAIVTNWIEDGTINSIEKARKDDGASKQLACKE
EEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHH
VLGEFDIQAHSNANYLWLRLHNKVRAEKIMSKLLERDVVVSTAEPFCTTDAVPQALRIAF
HHCCCCCEECCCCCEEEEEECCHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHH
GGIPDGVFDEAINAIRDTLKCYS
CCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]