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The map label for this gene is yiaM [C]

Identifier: 92113201

GI number: 92113201

Start: 1212629

End: 1213147

Strand: Direct

Name: yiaM [C]

Synonym: Csal_1073

Alternate gene names: 92113201

Gene position: 1212629-1213147 (Clockwise)

Preceding gene: 92113200

Following gene: 92113202

Centisome position: 32.8

GC content: 58.19

Gene sequence:

>519_bases
ATGTCGATGACGACCTTGTTCGGTTTCTTGAAAACATCCATCAGGCTGGCCATTGCCGTGGCCCTGGTGCTGATGGTGGG
GTTCGTCTTTACCAATGTCGTGCTCCGCTATGCCTTCGACAGCGGACTGACATGGTCCAGTGAGGTGGCGCGATACCTCT
TCGTATGGGTCGTGTTCCTGGGCTCCATCCTCGCGGTGATGGAACATAGCCACCTGGGCGTGGACATCCTGGTACGCCAC
ATTCCCGGCTGGCTTCAGAAGCTGCTGTTCCTGCTGACGACGGCCCTGACCGTGGCGGTGATGACTCTCGTGGTCAAAGG
GCTTCTGGTCCTGATCGAACTGAACGTGGGGATTACCGGACCCGCCACCGATATTCCCATCAACAATTACTACTATGCCG
GCATGATCGCGGCCATTCTGATGTCCGCGGTGATGGCGTACCAGGCGTTGAGCTTCGTCCTGACCGGCCGTAATGGCCCC
ACATGGGCCTACGATCGTGACCAGGAGTCGGTGTCATGA

Upstream 100 bases:

>100_bases
GGTGAAGATGGTACGTGAAGGTTCCTGAGGTGCGTCATATGCATGCCATGCGAACTCCTGGAGTTCGCATGGCAAAACCG
AGTGGACAAGAGGTGGTTTC

Downstream 100 bases:

>100_bases
TGGTCGTCGTCTTCCTCGCCGTGCTGTTCTCGTTGATGTTGATCGGCATGCCGATCGCCTTCGCCATGCTCAGCTCCGCC
GTGGTGATGATGTGGACCCA

Product: tripartite ATP-independent periplasmic transporter DctQ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MSMTTLFGFLKTSIRLAIAVALVLMVGFVFTNVVLRYAFDSGLTWSSEVARYLFVWVVFLGSILAVMEHSHLGVDILVRH
IPGWLQKLLFLLTTALTVAVMTLVVKGLLVLIELNVGITGPATDIPINNYYYAGMIAAILMSAVMAYQALSFVLTGRNGP
TWAYDRDQESVS

Sequences:

>Translated_172_residues
MSMTTLFGFLKTSIRLAIAVALVLMVGFVFTNVVLRYAFDSGLTWSSEVARYLFVWVVFLGSILAVMEHSHLGVDILVRH
IPGWLQKLLFLLTTALTVAVMTLVVKGLLVLIELNVGITGPATDIPINNYYYAGMIAAILMSAVMAYQALSFVLTGRNGP
TWAYDRDQESVS
>Mature_171_residues
SMTTLFGFLKTSIRLAIAVALVLMVGFVFTNVVLRYAFDSGLTWSSEVARYLFVWVVFLGSILAVMEHSHLGVDILVRHI
PGWLQKLLFLLTTALTVAVMTLVVKGLLVLIELNVGITGPATDIPINNYYYAGMIAAILMSAVMAYQALSFVLTGRNGPT
WAYDRDQESVS

Specific function: Unknown

COG id: COG3090

COG function: function code G; TRAP-type C4-dicarboxylate transport system, small permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter small permease family [H]

Homologues:

Organism=Escherichia coli, GI1790002, Length=88, Percent_Identity=36.3636363636364, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007387 [H]

Pfam domain/function: PF04290 DctQ [H]

EC number: NA

Molecular weight: Translated: 18910; Mature: 18779

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMTTLFGFLKTSIRLAIAVALVLMVGFVFTNVVLRYAFDSGLTWSSEVARYLFVWVVFL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
GSILAVMEHSHLGVDILVRHIPGWLQKLLFLLTTALTVAVMTLVVKGLLVLIELNVGITG
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PATDIPINNYYYAGMIAAILMSAVMAYQALSFVLTGRNGPTWAYDRDQESVS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SMTTLFGFLKTSIRLAIAVALVLMVGFVFTNVVLRYAFDSGLTWSSEVARYLFVWVVFL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
GSILAVMEHSHLGVDILVRHIPGWLQKLLFLLTTALTVAVMTLVVKGLLVLIELNVGITG
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PATDIPINNYYYAGMIAAILMSAVMAYQALSFVLTGRNGPTWAYDRDQESVS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]