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The map label for this gene is soxB [H]

Identifier: 92113126

GI number: 92113126

Start: 1124377

End: 1125627

Strand: Direct

Name: soxB [H]

Synonym: Csal_0998

Alternate gene names: 92113126

Gene position: 1124377-1125627 (Clockwise)

Preceding gene: 92113125

Following gene: 92113127

Centisome position: 30.42

GC content: 64.43

Gene sequence:

>1251_bases
ATGCAACGTTATTCAGGCTTCGGCCTCGTCAAGCACGCGTTACGCCACCACGAGGATTGGCAGCGCCAATGGCGCAATCC
CACGCCCAAGCCGGGGTACGACGTGATCATCGTCGGCGGCGGCGGGCACGGTCTGGCCACGGCGTACTATCTGGCCAAGG
AGCACGGCATCACCAATGTGGCAGTGCTCGAGAAGGGCTGGCTGGGCGGCGGCAATACTGCGCGCAACACCACCATCGTG
CGTTCCAATTACCTGTGGGACGAGTCGGCGGCGCTCTACGAGCATGCGATGAAGCATTGGGAAGGGCTCTCTCAGGAACT
CAACTACAACGTCATGTTCTCCCAGCGTGGCGTGTTGAACCTGGGCCATACCCTGCAGGACATGCGCGATATTCAGCGCC
GGGTCAACGCCAACCGACTCAATGGTATCGACGGTGAGGTGCTGGATGCCCAGGGCGTGCAGTCGCTGGTGCCGATCATG
GACTGCTCGAAGCATGCACGATATCCGGTCATGGGCGCGTCCTGGCAGCCGCGCGCCGGGGTGGCGCGTCACGATGCCGT
GGCCTGGGGCTATGCCCGCGCCGCCGATGCGCTGGGCGTCGACCTGTTGCAGAACACCGAGGTCACCGGCTTCAAGATTC
GCGATGGGCGGATCCTGGGCGTGCATACCAACCGCGGCGACATCGAGGCCAAGACCGTGGGCTGCGTCACGGCAGGCAAC
TCCAGCGTGCTGGCCCGCATGGCCGACCTCAACCTGCCGCTGGAGTCGCATCCCTTGCAGGCGCTGGTCTCCGAGCCGCT
CAAGCCGGTACTCGATACCGTGGTGATGTCCAATCACGTGCACGGTTACATCAGCCAGTCCGACAAGGGCGACCTGGTCA
TCGGTGCCGGCATCGACGGCTACAACGGCTACGGCCAGCGGGGCAGCTATCCCACCGTCGAGCACACCTTGCAGGCCATC
GTCGAGATGTTCCCGATCTTCTCCCGGGTGCGCATGAACCGCCAGTGGGGTGGCATCGTCGATACCTGTCCGGATGCCTG
TCCGATCCTCTCCAAGACCAAGGTCAAGGGGCTCTACTTCAATTGCGGCTGGGGTACGGGCGGCTTCAAGGCAACGCCGG
GCTCGGGGCATGTCTTCGCGGCCAGTCTGGCCAAGGGCGAGATGCATCCCATCGCCGCGCCGTTTTCCATCGACCGCTTC
CACAGCGGGGCGTTGATCGACGAGCACGGCGCCGCTGGCGTCGCGCACTAG

Upstream 100 bases:

>100_bases
GCAAGTACCCCGTGCCAGGAGGGACGGGGCTACCATCGCGTCATACACAGACACGTCGCCGTGCCATGACAGCGCACGGG
GATCGCGCAGGAGAGGTGCC

Downstream 100 bases:

>100_bases
GGCTCGTCTGAAAAGTCGACGAGCGATTATCAGACAAGGCAAAAATGGGCGAAAAGACGGAGTTTACAGATCGTAAATGA
GTACTTTGAGCCTATTTTTA

Product: sarcosine oxidase beta subunit family protein

Products: NA

Alternate protein names: Sarcosine oxidase subunit B [H]

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MQRYSGFGLVKHALRHHEDWQRQWRNPTPKPGYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTARNTTIV
RSNYLWDESAALYEHAMKHWEGLSQELNYNVMFSQRGVLNLGHTLQDMRDIQRRVNANRLNGIDGEVLDAQGVQSLVPIM
DCSKHARYPVMGASWQPRAGVARHDAVAWGYARAADALGVDLLQNTEVTGFKIRDGRILGVHTNRGDIEAKTVGCVTAGN
SSVLARMADLNLPLESHPLQALVSEPLKPVLDTVVMSNHVHGYISQSDKGDLVIGAGIDGYNGYGQRGSYPTVEHTLQAI
VEMFPIFSRVRMNRQWGGIVDTCPDACPILSKTKVKGLYFNCGWGTGGFKATPGSGHVFAASLAKGEMHPIAAPFSIDRF
HSGALIDEHGAAGVAH

Sequences:

>Translated_416_residues
MQRYSGFGLVKHALRHHEDWQRQWRNPTPKPGYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTARNTTIV
RSNYLWDESAALYEHAMKHWEGLSQELNYNVMFSQRGVLNLGHTLQDMRDIQRRVNANRLNGIDGEVLDAQGVQSLVPIM
DCSKHARYPVMGASWQPRAGVARHDAVAWGYARAADALGVDLLQNTEVTGFKIRDGRILGVHTNRGDIEAKTVGCVTAGN
SSVLARMADLNLPLESHPLQALVSEPLKPVLDTVVMSNHVHGYISQSDKGDLVIGAGIDGYNGYGQRGSYPTVEHTLQAI
VEMFPIFSRVRMNRQWGGIVDTCPDACPILSKTKVKGLYFNCGWGTGGFKATPGSGHVFAASLAKGEMHPIAAPFSIDRF
HSGALIDEHGAAGVAH
>Mature_416_residues
MQRYSGFGLVKHALRHHEDWQRQWRNPTPKPGYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTARNTTIV
RSNYLWDESAALYEHAMKHWEGLSQELNYNVMFSQRGVLNLGHTLQDMRDIQRRVNANRLNGIDGEVLDAQGVQSLVPIM
DCSKHARYPVMGASWQPRAGVARHDAVAWGYARAADALGVDLLQNTEVTGFKIRDGRILGVHTNRGDIEAKTVGCVTAGN
SSVLARMADLNLPLESHPLQALVSEPLKPVLDTVVMSNHVHGYISQSDKGDLVIGAGIDGYNGYGQRGSYPTVEHTLQAI
VEMFPIFSRVRMNRQWGGIVDTCPDACPILSKTKVKGLYFNCGWGTGGFKATPGSGHVFAASLAKGEMHPIAAPFSIDRF
HSGALIDEHGAAGVAH

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the soxB family [H]

Homologues:

Organism=Homo sapiens, GI197927446, Length=394, Percent_Identity=21.3197969543147, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI21361378, Length=394, Percent_Identity=21.3197969543147, Blast_Score=86, Evalue=6e-17,
Organism=Drosophila melanogaster, GI20130091, Length=384, Percent_Identity=23.1770833333333, Blast_Score=80, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR006278 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 45233; Mature: 45233

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRYSGFGLVKHALRHHEDWQRQWRNPTPKPGYDVIIVGGGGHGLATAYYLAKEHGITNV
CCCCCCHHHHHHHHHCCHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEE
AVLEKGWLGGGNTARNTTIVRSNYLWDESAALYEHAMKHWEGLSQELNYNVMFSQRGVLN
EEEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHH
LGHTLQDMRDIQRRVNANRLNGIDGEVLDAQGVQSLVPIMDCSKHARYPVMGASWQPRAG
HHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
VARHDAVAWGYARAADALGVDLLQNTEVTGFKIRDGRILGVHTNRGDIEAKTVGCVTAGN
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEECCCCCCEEEEEEEEECCC
SSVLARMADLNLPLESHPLQALVSEPLKPVLDTVVMSNHVHGYISQSDKGDLVIGAGIDG
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEECCCCC
YNGYGQRGSYPTVEHTLQAIVEMFPIFSRVRMNRQWGGIVDTCPDACPILSKTKVKGLYF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCEECEEEE
NCGWGTGGFKATPGSGHVFAASLAKGEMHPIAAPFSIDRFHSGALIDEHGAAGVAH
ECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCEEECCCCCCCCC
>Mature Secondary Structure
MQRYSGFGLVKHALRHHEDWQRQWRNPTPKPGYDVIIVGGGGHGLATAYYLAKEHGITNV
CCCCCCHHHHHHHHHCCHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEE
AVLEKGWLGGGNTARNTTIVRSNYLWDESAALYEHAMKHWEGLSQELNYNVMFSQRGVLN
EEEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHH
LGHTLQDMRDIQRRVNANRLNGIDGEVLDAQGVQSLVPIMDCSKHARYPVMGASWQPRAG
HHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
VARHDAVAWGYARAADALGVDLLQNTEVTGFKIRDGRILGVHTNRGDIEAKTVGCVTAGN
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEECCCCCCEEEEEEEEECCC
SSVLARMADLNLPLESHPLQALVSEPLKPVLDTVVMSNHVHGYISQSDKGDLVIGAGIDG
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEECCCCC
YNGYGQRGSYPTVEHTLQAIVEMFPIFSRVRMNRQWGGIVDTCPDACPILSKTKVKGLYF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCEECEEEE
NCGWGTGGFKATPGSGHVFAASLAKGEMHPIAAPFSIDRFHSGALIDEHGAAGVAH
ECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7543100; 1939012; 3202887; 7692961 [H]