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The map label for this gene is soxD [H]

Identifier: 92113127

GI number: 92113127

Start: 1125783

End: 1126175

Strand: Direct

Name: soxD [H]

Synonym: Csal_0999

Alternate gene names: 92113127

Gene position: 1125783-1126175 (Clockwise)

Preceding gene: 92113126

Following gene: 92113128

Centisome position: 30.45

GC content: 59.54

Gene sequence:

>393_bases
ATGTTCCATATCTATTGCCCCTATTGCGAAGAATTGCGCGAAGAAGAGGAGTTTCATCCCAAAGGCCAAGCGCATATCGC
TCGTCCCGAGGACCCGGACGCCTGCAGCGACGAGGAATGGGGCGACTATCTGTTCTTCCGCGACAACCCGCGCGGCATCC
ATCACGAGATGTGGCTGCACGCGGTGGGTTGTCGCAAGTTCTTCAATATCACGCGCAATACCGTGAGTTACGAGATCCTC
GAAACCTACAAAATGGGCGAGCAGCCGACGGTAGGCGCCGAGCATCTGGCGCGTGAAGAAAAAACCGCGAGCGTGCAGGC
TGCCGAGGGCGGCCAGCAGACCGTGGGTGCCAGTGACGCCGCTCTGGCGTCGGTCAAGGGAGCACAGGCATGA

Upstream 100 bases:

>100_bases
GACGGAGTTTACAGATCGTAAATGAGTACTTTGAGCCTATTTTTAACGCCGTATGATCGAGCGCAGGCACTTTTCAGACA
GTGCCTAAGGGAGAGCCACC

Downstream 100 bases:

>100_bases
GCCAGACAGCATCACAGTCCAACCGCCTGGCGCAAGGCGGCCAGGTCGACCGCACGCAGACGTTGACCTTTACCTTCAAT
GGCCGCACATACACCGGCCA

Product: sarcosine oxidase delta subunit family protein

Products: NA

Alternate protein names: Sarcosine oxidase subunit D [H]

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MFHIYCPYCEELREEEEFHPKGQAHIARPEDPDACSDEEWGDYLFFRDNPRGIHHEMWLHAVGCRKFFNITRNTVSYEIL
ETYKMGEQPTVGAEHLAREEKTASVQAAEGGQQTVGASDAALASVKGAQA

Sequences:

>Translated_130_residues
MFHIYCPYCEELREEEEFHPKGQAHIARPEDPDACSDEEWGDYLFFRDNPRGIHHEMWLHAVGCRKFFNITRNTVSYEIL
ETYKMGEQPTVGAEHLAREEKTASVQAAEGGQQTVGASDAALASVKGAQA
>Mature_130_residues
MFHIYCPYCEELREEEEFHPKGQAHIARPEDPDACSDEEWGDYLFFRDNPRGIHHEMWLHAVGCRKFFNITRNTVSYEIL
ETYKMGEQPTVGAEHLAREEKTASVQAAEGGQQTVGASDAALASVKGAQA

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG4311

COG function: function code E; Sarcosine oxidase delta subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006279 [H]

Pfam domain/function: PF04267 SoxD [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 14687; Mature: 14687

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFHIYCPYCEELREEEEFHPKGQAHIARPEDPDACSDEEWGDYLFFRDNPRGIHHEMWLH
CEEEECCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHH
AVGCRKFFNITRNTVSYEILETYKMGEQPTVGAEHLAREEKTASVQAAEGGQQTVGASDA
HHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCEEECCCCCCCCCCCCCH
ALASVKGAQA
HHHHCCCCCC
>Mature Secondary Structure
MFHIYCPYCEELREEEEFHPKGQAHIARPEDPDACSDEEWGDYLFFRDNPRGIHHEMWLH
CEEEECCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHH
AVGCRKFFNITRNTVSYEILETYKMGEQPTVGAEHLAREEKTASVQAAEGGQQTVGASDA
HHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCEEECCCCCCCCCCCCCH
ALASVKGAQA
HHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7543100 [H]