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The map label for this gene is qseB [H]

Identifier: 92112859

GI number: 92112859

Start: 815287

End: 815955

Strand: Direct

Name: qseB [H]

Synonym: Csal_0727

Alternate gene names: 92112859

Gene position: 815287-815955 (Clockwise)

Preceding gene: 92112855

Following gene: 92112860

Centisome position: 22.05

GC content: 69.36

Gene sequence:

>669_bases
ATGCGCCTGCTCGTCATCGAAGATGATCCCCTGATTGCGCGCTCGCTGGAGCAAGCGCTCACCCCGCTGGGCAACACCGT
CGACGTGTTCACGCACCACGCGCAGGCGCGCGAGGCCCTGCAGAGCGGGCAGTTCGATCTGGTGCTGCTCGACCTGGGGC
TGCCCGACGGCAACGGCCTGACGCTGCTGGCGGAACTGCGCCAGCGCGGCGATACCACGCCGGTGCTGATCCTGACGGCC
CGCGACGGCATCGACGCGCGCGTGGAAGGGTTGGATCTCGGCGCCGACGACTACCTGGCCAAGCCGTTCTCGCTCGCCGA
GCTGGAAGCCCGGGTGCGTGCCTTGCTGCGCCGCAGCCAGAAGCGCGCCGACAACCGCCTGACGTTCGGGCCGCTGGCCT
TCGACGCCGCCTCGGGCGTCGCCACGCTGAACGAGACGGTGCTCGACCTGCCGCGCCGTGAGCTGCGCCTGCTGGAGAGC
CTGCTGCTGCATGCCGGCAGCATCACGCCGCGCGAGACCCTGGAGAATCGCCTCTTCGGGTTCGGCGATGTCGGCTCCAA
CGCGTTGGAGGTGTACATCAGCCGCTTGCGCAAACGGCTCGACGGCAGCGGGCTGCGCATTCGCACCTTTCGCGGCATGG
GGTATCGGCTCGAGGAAGCCGCTTCGTGA

Upstream 100 bases:

>100_bases
GTGGCTGATGTCATCGCCATGGATGACGGGTATCGATGCTAGGGAGGTAACCTTTCATCAACCTGTCATCGTACGTTCGC
CCACATGAGACATTGGTCGT

Downstream 100 bases:

>100_bases
TCCAGGTGGAAGGCTCACTGAAGGCCCGCCTGGCCGTCTGGCTGGTCGTGACCGTCAGCGCGCTCGGCGTGCTGCTGCTG
GTCGAGGCCTATTTCAGTTC

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MRLLVIEDDPLIARSLEQALTPLGNTVDVFTHHAQAREALQSGQFDLVLLDLGLPDGNGLTLLAELRQRGDTTPVLILTA
RDGIDARVEGLDLGADDYLAKPFSLAELEARVRALLRRSQKRADNRLTFGPLAFDAASGVATLNETVLDLPRRELRLLES
LLLHAGSITPRETLENRLFGFGDVGSNALEVYISRLRKRLDGSGLRIRTFRGMGYRLEEAAS

Sequences:

>Translated_222_residues
MRLLVIEDDPLIARSLEQALTPLGNTVDVFTHHAQAREALQSGQFDLVLLDLGLPDGNGLTLLAELRQRGDTTPVLILTA
RDGIDARVEGLDLGADDYLAKPFSLAELEARVRALLRRSQKRADNRLTFGPLAFDAASGVATLNETVLDLPRRELRLLES
LLLHAGSITPRETLENRLFGFGDVGSNALEVYISRLRKRLDGSGLRIRTFRGMGYRLEEAAS
>Mature_222_residues
MRLLVIEDDPLIARSLEQALTPLGNTVDVFTHHAQAREALQSGQFDLVLLDLGLPDGNGLTLLAELRQRGDTTPVLILTA
RDGIDARVEGLDLGADDYLAKPFSLAELEARVRALLRRSQKRADNRLTFGPLAFDAASGVATLNETVLDLPRRELRLLES
LLLHAGSITPRETLENRLFGFGDVGSNALEVYISRLRKRLDGSGLRIRTFRGMGYRLEEAAS

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC. Currently it is not known whether this effect is direct or not [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=220, Percent_Identity=46.8181818181818, Blast_Score=178, Evalue=2e-46,
Organism=Escherichia coli, GI1790552, Length=218, Percent_Identity=43.5779816513761, Blast_Score=166, Evalue=9e-43,
Organism=Escherichia coli, GI1786784, Length=222, Percent_Identity=38.2882882882883, Blast_Score=139, Evalue=1e-34,
Organism=Escherichia coli, GI87082012, Length=218, Percent_Identity=37.1559633027523, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI1787375, Length=221, Percent_Identity=33.0316742081448, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1786911, Length=223, Percent_Identity=37.219730941704, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI1788394, Length=227, Percent_Identity=34.3612334801762, Blast_Score=113, Evalue=9e-27,
Organism=Escherichia coli, GI1786599, Length=222, Percent_Identity=34.6846846846847, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1790860, Length=221, Percent_Identity=34.3891402714932, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1787229, Length=224, Percent_Identity=33.9285714285714, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1789809, Length=225, Percent_Identity=30.2222222222222, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI2367329, Length=233, Percent_Identity=36.0515021459227, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1790863, Length=229, Percent_Identity=29.2576419213974, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI145693140, Length=229, Percent_Identity=31.0043668122271, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790299, Length=124, Percent_Identity=37.9032258064516, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI48994928, Length=122, Percent_Identity=37.7049180327869, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1788550, Length=122, Percent_Identity=33.6065573770492, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1790437, Length=118, Percent_Identity=33.0508474576271, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1787487, Length=101, Percent_Identity=34.6534653465347, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24440; Mature: 24440

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLVIEDDPLIARSLEQALTPLGNTVDVFTHHAQAREALQSGQFDLVLLDLGLPDGNGL
CEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCH
TLLAELRQRGDTTPVLILTARDGIDARVEGLDLGADDYLAKPFSLAELEARVRALLRRSQ
HHHHHHHHCCCCCCEEEEEECCCCCCEEECCCCCCCHHHCCCCHHHHHHHHHHHHHHHHH
KRADNRLTFGPLAFDAASGVATLNETVLDLPRRELRLLESLLLHAGSITPRETLENRLFG
HHHCCCCEECCHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
FGDVGSNALEVYISRLRKRLDGSGLRIRTFRGMGYRLEEAAS
CCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHCCC
>Mature Secondary Structure
MRLLVIEDDPLIARSLEQALTPLGNTVDVFTHHAQAREALQSGQFDLVLLDLGLPDGNGL
CEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCH
TLLAELRQRGDTTPVLILTARDGIDARVEGLDLGADDYLAKPFSLAELEARVRALLRRSQ
HHHHHHHHCCCCCCEEEEEECCCCCCEEECCCCCCCHHHCCCCHHHHHHHHHHHHHHHHH
KRADNRLTFGPLAFDAASGVATLNETVLDLPRRELRLLESLLLHAGSITPRETLENRLFG
HHHCCCCEECCHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
FGDVGSNALEVYISRLRKRLDGSGLRIRTFRGMGYRLEEAAS
CCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796; 11929534 [H]