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The map label for this gene is rbsB [H]

Identifier: 92112496

GI number: 92112496

Start: 406689

End: 407645

Strand: Direct

Name: rbsB [H]

Synonym: Csal_0363

Alternate gene names: 92112496

Gene position: 406689-407645 (Clockwise)

Preceding gene: 92112495

Following gene: 92112497

Centisome position: 11.0

GC content: 61.96

Gene sequence:

>957_bases
ATGTTCATGAAAGGAAAACGCCTGCTTATCGCGGCTCTGGCCGTGGGTGTTCCGCTTCTGGCGAGCGGTGCCTCGGCGCA
GGATAAAGGGCTGATGTCGATTATCGTCAACGATACGTCGAACCCTTACTGGTTCACCGAAGGCAAGATTGCCGAAGAGA
CGGCCGAGAAGCTGGGCTATGAAGCCGACGTGAGCTCCCACAAGGGGGACACCAATACCGAGAGCCGGCAGATCGACACG
GCCATCACCAACCAGGCCGAGGCGATCATCCTCGACCCGGCCAATGCCGACGGTTCCATCGGCGCGGTACGCAAGGCCGT
GGAAGCGGGCATCCCGGTCTTCATCATCAACGCGGAAATCAACCAGCAAGGGCTGGCCGAGGCGCAGCTCGTGTCGAACA
ACGCACAGGGCGCCGCGCTGGGGGCACAGCAGTGGATCAAGAGCGTGGGCGACTCGGCACGCTACGTCGAGCTCAAGGGC
GCGCCGTCGGACAACAATGCCGCCACGCGCTCCAACGGTTATGAAACCGTGCTCAGCCAGTATCCCGGTCTCGAAAAGGT
GGGTTCCGACGTGGCCAACTGGGATCGGACCCAAGGGTTCAACAAGACGCAGAGCATGTTGCAGGCCAACCCGGACATCG
ATGGCGTGATCAGCGGCAACGATGAAATGGCGCTGGGGGCGATCTCGGCGTTGAAAGAGGCCGGCAAGCTCGACGATGTG
GTCGTGGGCGGTTTCGATGGCTCGCCCGATGCGGTCGAAGCCGTGAAGGCCGGCGAGATGGACTATACCGTGCTGCAGCC
GGTGGCCATCTTCTCGGAGATGGCGGTCCGCATGGCCGACAAGTACGTCACCACCGGCGAGACCGGGGTGGACGGCGAGA
AGCAGCTGTTCGATTGCTTCCTCATCACCTCGGACAATGTCGACGACTACACCGACCCGTTCGTCCTCGAGCAGTAA

Upstream 100 bases:

>100_bases
GACTTCACCGCAACCGGAAGGCGCCAGCGAGCGCTCGCCGGCCACGGGAAGCACTACCGGCAAAGCCGGTGCACAATCAT
AAGAGTAAAGGTGGTCCACT

Downstream 100 bases:

>100_bases
GTCCCGCCCGGGGCCTGGCTCGAGCCGAGCCAGGCCCCGCTCCCGCCTAACAAGTCCCGAGAGCGCCATCCGGCGCTCTC
GGTGTCGTCATGCAGCCACC

Product: periplasmic binding protein/LacI transcriptional regulator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MFMKGKRLLIAALAVGVPLLASGASAQDKGLMSIIVNDTSNPYWFTEGKIAEETAEKLGYEADVSSHKGDTNTESRQIDT
AITNQAEAIILDPANADGSIGAVRKAVEAGIPVFIINAEINQQGLAEAQLVSNNAQGAALGAQQWIKSVGDSARYVELKG
APSDNNAATRSNGYETVLSQYPGLEKVGSDVANWDRTQGFNKTQSMLQANPDIDGVISGNDEMALGAISALKEAGKLDDV
VVGGFDGSPDAVEAVKAGEMDYTVLQPVAIFSEMAVRMADKYVTTGETGVDGEKQLFDCFLITSDNVDDYTDPFVLEQ

Sequences:

>Translated_318_residues
MFMKGKRLLIAALAVGVPLLASGASAQDKGLMSIIVNDTSNPYWFTEGKIAEETAEKLGYEADVSSHKGDTNTESRQIDT
AITNQAEAIILDPANADGSIGAVRKAVEAGIPVFIINAEINQQGLAEAQLVSNNAQGAALGAQQWIKSVGDSARYVELKG
APSDNNAATRSNGYETVLSQYPGLEKVGSDVANWDRTQGFNKTQSMLQANPDIDGVISGNDEMALGAISALKEAGKLDDV
VVGGFDGSPDAVEAVKAGEMDYTVLQPVAIFSEMAVRMADKYVTTGETGVDGEKQLFDCFLITSDNVDDYTDPFVLEQ
>Mature_318_residues
MFMKGKRLLIAALAVGVPLLASGASAQDKGLMSIIVNDTSNPYWFTEGKIAEETAEKLGYEADVSSHKGDTNTESRQIDT
AITNQAEAIILDPANADGSIGAVRKAVEAGIPVFIINAEINQQGLAEAQLVSNNAQGAALGAQQWIKSVGDSARYVELKG
APSDNNAATRSNGYETVLSQYPGLEKVGSDVANWDRTQGFNKTQSMLQANPDIDGVISGNDEMALGAISALKEAGKLDDV
VVGGFDGSPDAVEAVKAGEMDYTVLQPVAIFSEMAVRMADKYVTTGETGVDGEKQLFDCFLITSDNVDDYTDPFVLEQ

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=287, Percent_Identity=30.6620209059233, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1790526, Length=261, Percent_Identity=27.5862068965517, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1790674, Length=226, Percent_Identity=26.5486725663717, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1789990, Length=249, Percent_Identity=27.710843373494, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788898, Length=193, Percent_Identity=29.0155440414508, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 33625; Mature: 33625

Theoretical pI: Translated: 4.02; Mature: 4.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFMKGKRLLIAALAVGVPLLASGASAQDKGLMSIIVNDTSNPYWFTEGKIAEETAEKLGY
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEECCCHHHHHHHHCCC
EADVSSHKGDTNTESRQIDTAITNQAEAIILDPANADGSIGAVRKAVEAGIPVFIINAEI
CCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCC
NQQGLAEAQLVSNNAQGAALGAQQWIKSVGDSARYVELKGAPSDNNAATRSNGYETVLSQ
CCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHH
YPGLEKVGSDVANWDRTQGFNKTQSMLQANPDIDGVISGNDEMALGAISALKEAGKLDDV
CCCHHHHCCHHHHHHHHCCCCHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCE
VVGGFDGSPDAVEAVKAGEMDYTVLQPVAIFSEMAVRMADKYVTTGETGVDGEKQLFDCF
EEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEE
LITSDNVDDYTDPFVLEQ
EEECCCCCCCCCCEEECC
>Mature Secondary Structure
MFMKGKRLLIAALAVGVPLLASGASAQDKGLMSIIVNDTSNPYWFTEGKIAEETAEKLGY
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEECCCHHHHHHHHCCC
EADVSSHKGDTNTESRQIDTAITNQAEAIILDPANADGSIGAVRKAVEAGIPVFIINAEI
CCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCC
NQQGLAEAQLVSNNAQGAALGAQQWIKSVGDSARYVELKGAPSDNNAATRSNGYETVLSQ
CCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHH
YPGLEKVGSDVANWDRTQGFNKTQSMLQANPDIDGVISGNDEMALGAISALKEAGKLDDV
CCCHHHHCCHHHHHHHHCCCCHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCE
VVGGFDGSPDAVEAVKAGEMDYTVLQPVAIFSEMAVRMADKYVTTGETGVDGEKQLFDCF
EEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEE
LITSDNVDDYTDPFVLEQ
EEECCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6313683; 7686882; 9278503; 3011793; 3011794; 8899705; 9298646; 1583688; 7982928; 9641984 [H]