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The map label for this gene is rbsC [H]

Identifier: 92112495

GI number: 92112495

Start: 405519

End: 406670

Strand: Direct

Name: rbsC [H]

Synonym: Csal_0362

Alternate gene names: 92112495

Gene position: 405519-406670 (Clockwise)

Preceding gene: 92112494

Following gene: 92112496

Centisome position: 10.97

GC content: 64.5

Gene sequence:

>1152_bases
ATGTCCAATATGAACCAAACCGCTTCCAGCTCGCGTTCGCAAGGCGGCGGACGTCGTTTCGACGTGGCGCGCATGCTGCT
GGAGGGGCGCGCTTTCTTCGCCTTGATCGCGATCATCGTCATCTTCTCGTTGCTGTCGCCTGTCTACTTTTCGACCAGCA
ACTTTCTGACCATGTCGTCGCACGTCGCCATCTTCGGGTTGCTGTCGCTGGGGATGTTGCTGGTGATCTTGACGGGGGGC
ATCGATCTGTCCGTGGGGTCCACGCTTGGCCTGGCGGGCGTGTTCGCGGGATTTCTGATGCAGGGCGTCTCGTTCGAAGC
CTTTGGCGTGGTGGTGTATCCGCCCGTTTGGGTGGTGGTCGTGCTGACGTGTGGCCTGGGGGCCCTGGTCGGAGCGATCA
ACGGCGTTCTCATCGCCTATTTCAAGGTGCCGGCGTTCGTGGCGACCTTGGGGCTCTTGTACGTGGCCCGTGGCGTTGCG
CTGCTGATGACCGATGGCTTGACCTACAACAACCTCGGTGGAAGCGAGGCGCTGGGCAATACCGGGTTCGATTGGCTGGG
GTTCAATCGGCTGTTCGGCATCCCGGTCGGCGTGCTGATCCTGGCGGCCGTGGCGATCGCCTGCCTGTTGCTGCTGTCGC
GCACGCCGTTCGGGCGCTGGGTGTATTCCACCGGCGGCAACGCGCGGGCCGCCGAGCTTTCCGGGGTGCCGGTCAAGCGC
GTGCAGGTCTCGGTGTATGTGCTGTCCGGTATCTGCGCGGCGATCGCCGGCCTGGTGCTGTCCTCGCAGTTGACCTCGGC
GGGGCCGACGGCCGGCACGACCTATGAGCTCACCGCGATCGCGGGGGTGGTCATCGGTGGCGCGGCACTCACCGGTGGTC
GCGGCAACGTGCGCGGCACCCTGCTGGGCGCCTTCGTGATCGGGTTTCTCTCCGACGGGCTGGTGATCATCGGGGTCTCG
TCGTACTGGCAGACCGTGTTCACCGGGGCCGTCATCATTCTCGCGGTTCTGCTCAACAGCATTCAGTACAGCGGTCGGAA
GAACAGCAAGCCCGCTTCCGATGGCAAGCCGACTTCACCGCAACCGGAAGGCGCCAGCGAGCGCTCGCCGGCCACGGGAA
GCACTACCGGCAAAGCCGGTGCACAATCATAA

Upstream 100 bases:

>100_bases
CGCGGCGGAGTTCGGTGCCGATGCCAGCAAGGAAGACATCATGGCGGCCTCGGGCGAAGCCGTGGTCGCTTGATCCATTC
ATGTCGCGGAGTTCCCAACA

Downstream 100 bases:

>100_bases
GAGTAAAGGTGGTCCACTATGTTCATGAAAGGAAAACGCCTGCTTATCGCGGCTCTGGCCGTGGGTGTTCCGCTTCTGGC
GAGCGGTGCCTCGGCGCAGG

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 382

Protein sequence:

>383_residues
MSNMNQTASSSRSQGGGRRFDVARMLLEGRAFFALIAIIVIFSLLSPVYFSTSNFLTMSSHVAIFGLLSLGMLLVILTGG
IDLSVGSTLGLAGVFAGFLMQGVSFEAFGVVVYPPVWVVVVLTCGLGALVGAINGVLIAYFKVPAFVATLGLLYVARGVA
LLMTDGLTYNNLGGSEALGNTGFDWLGFNRLFGIPVGVLILAAVAIACLLLLSRTPFGRWVYSTGGNARAAELSGVPVKR
VQVSVYVLSGICAAIAGLVLSSQLTSAGPTAGTTYELTAIAGVVIGGAALTGGRGNVRGTLLGAFVIGFLSDGLVIIGVS
SYWQTVFTGAVIILAVLLNSIQYSGRKNSKPASDGKPTSPQPEGASERSPATGSTTGKAGAQS

Sequences:

>Translated_383_residues
MSNMNQTASSSRSQGGGRRFDVARMLLEGRAFFALIAIIVIFSLLSPVYFSTSNFLTMSSHVAIFGLLSLGMLLVILTGG
IDLSVGSTLGLAGVFAGFLMQGVSFEAFGVVVYPPVWVVVVLTCGLGALVGAINGVLIAYFKVPAFVATLGLLYVARGVA
LLMTDGLTYNNLGGSEALGNTGFDWLGFNRLFGIPVGVLILAAVAIACLLLLSRTPFGRWVYSTGGNARAAELSGVPVKR
VQVSVYVLSGICAAIAGLVLSSQLTSAGPTAGTTYELTAIAGVVIGGAALTGGRGNVRGTLLGAFVIGFLSDGLVIIGVS
SYWQTVFTGAVIILAVLLNSIQYSGRKNSKPASDGKPTSPQPEGASERSPATGSTTGKAGAQS
>Mature_382_residues
SNMNQTASSSRSQGGGRRFDVARMLLEGRAFFALIAIIVIFSLLSPVYFSTSNFLTMSSHVAIFGLLSLGMLLVILTGGI
DLSVGSTLGLAGVFAGFLMQGVSFEAFGVVVYPPVWVVVVLTCGLGALVGAINGVLIAYFKVPAFVATLGLLYVARGVAL
LMTDGLTYNNLGGSEALGNTGFDWLGFNRLFGIPVGVLILAAVAIACLLLLSRTPFGRWVYSTGGNARAAELSGVPVKRV
QVSVYVLSGICAAIAGLVLSSQLTSAGPTAGTTYELTAIAGVVIGGAALTGGRGNVRGTLLGAFVIGFLSDGLVIIGVSS
YWQTVFTGAVIILAVLLNSIQYSGRKNSKPASDGKPTSPQPEGASERSPATGSTTGKAGAQS

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=324, Percent_Identity=41.358024691358, Blast_Score=210, Evalue=1e-55,
Organism=Escherichia coli, GI1788896, Length=318, Percent_Identity=40.251572327044, Blast_Score=176, Evalue=3e-45,
Organism=Escherichia coli, GI1789992, Length=368, Percent_Identity=32.8804347826087, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1790524, Length=337, Percent_Identity=34.7181008902077, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI145693152, Length=334, Percent_Identity=30.8383233532934, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1788471, Length=327, Percent_Identity=34.8623853211009, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI87082395, Length=307, Percent_Identity=34.2019543973941, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1787794, Length=337, Percent_Identity=33.8278931750742, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787793, Length=341, Percent_Identity=32.5513196480938, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI145693214, Length=263, Percent_Identity=37.2623574144487, Blast_Score=112, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 39163; Mature: 39032

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNMNQTASSSRSQGGGRRFDVARMLLEGRAFFALIAIIVIFSLLSPVYFSTSNFLTMSS
CCCCCHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHH
HVAIFGLLSLGMLLVILTGGIDLSVGSTLGLAGVFAGFLMQGVSFEAFGVVVYPPVWVVV
HHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHCCCEEEEEEEEECHHHHHH
VLTCGLGALVGAINGVLIAYFKVPAFVATLGLLYVARGVALLMTDGLTYNNLGGSEALGN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEECCCEECCCCCCHHCCC
TGFDWLGFNRLFGIPVGVLILAAVAIACLLLLSRTPFGRWVYSTGGNARAAELSGVPVKR
CCCCHHCHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCCCCHHH
VQVSVYVLSGICAAIAGLVLSSQLTSAGPTAGTTYELTAIAGVVIGGAALTGGRGNVRGT
HEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHCCCEEECCCCCCHHH
LLGAFVIGFLSDGLVIIGVSSYWQTVFTGAVIILAVLLNSIQYSGRKNSKPASDGKPTSP
HHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
QPEGASERSPATGSTTGKAGAQS
CCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SNMNQTASSSRSQGGGRRFDVARMLLEGRAFFALIAIIVIFSLLSPVYFSTSNFLTMSS
CCCCHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHH
HVAIFGLLSLGMLLVILTGGIDLSVGSTLGLAGVFAGFLMQGVSFEAFGVVVYPPVWVVV
HHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHCCCEEEEEEEEECHHHHHH
VLTCGLGALVGAINGVLIAYFKVPAFVATLGLLYVARGVALLMTDGLTYNNLGGSEALGN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEECCCEECCCCCCHHCCC
TGFDWLGFNRLFGIPVGVLILAAVAIACLLLLSRTPFGRWVYSTGGNARAAELSGVPVKR
CCCCHHCHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCCCCHHH
VQVSVYVLSGICAAIAGLVLSSQLTSAGPTAGTTYELTAIAGVVIGGAALTGGRGNVRGT
HEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHCCCEEECCCCCCHHH
LLGAFVIGFLSDGLVIIGVSSYWQTVFTGAVIILAVLLNSIQYSGRKNSKPASDGKPTSP
HHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
QPEGASERSPATGSTTGKAGAQS
CCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]