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The map label for this gene is gbpR [H]

Identifier: 92112471

GI number: 92112471

Start: 376271

End: 377503

Strand: Direct

Name: gbpR [H]

Synonym: Csal_0338

Alternate gene names: 92112471

Gene position: 376271-377503 (Clockwise)

Preceding gene: 92112468

Following gene: 92112478

Centisome position: 10.18

GC content: 64.96

Gene sequence:

>1233_bases
ATGTCGCATGACACGGTATCGCCAGGTCTTTCCCTTCGTGAAATTCGTGCCATCCTGGCGGTGGCCGAGCAGCGGGGTTT
TTCATCGGCTGCGCGAAGACTGAACATCAGCCAAAGCAGTCTGTCGCGTACCATTCATCGGGCCGAATCGGTACTGGCGA
TCCGCCTGTTTCAGCGCGGCTGGGGCGGGGCGGAACCGACGCCGGAAGGGGAAATCGTCCGCCAGCATTGCACGCAGGTG
ATGGCCGAGTTGCTGCACGAGCGTGATGCGTTGATGGCGGCGGGGTTGACCCGATTGCCACTGCCGCTGGATTTGCGCTG
GCGCGATCTGGCATGCGTGGCGGCGGTAGTGCACACGGGGAAGACGACAACGGCGGCCAAGTGGTTGCGGACGTCCCAGT
CGAGCGTCAGCCGTACTCTGGGCGCCATCTCGGTCAGGCTGGGGAGCCCGTTGTTCCAGCGCTCGGGAGAGGGACTGCGT
GCCGAGCCTCTGGCGGAGAGGCTCGTGGCGTTGCGCGATCGCATGTGCGCCCGGATGCAACCGCTGCAGGAGCGCCTGGG
GCATCTGGCCGGCGAGGTGACGGGGCGCCTGGCGGTGGGAATGACACCGTTCTGCGAGCAGGAACGCGTTGCCCAGGCCT
TCGGCGACTTGCTGGTGGCGTATCCTCAACTGCGCCTGTCGGCCGTGACCGGCAGCTACGTCATGCTGACGGATGCCCTG
CGCTGCGGGGAAATCGACCTGGTCGTCGGCTTGTTGCGCGAACTCGGGGAGGACGATGAGCTGGCAGAGTTACCACTGGC
GGAAGAAGCCATTACGGTGCTGGCACGCTCGGATCACCCTTGCGCCGTGCGATCCGTGTCGATGGAAGATCTGGCACGTC
AAACCTGGATCGTGGCGCCGGCGGGGACGCCGATACGGGCCTATTTCGAGCGGCTTTTCCTGGGCATGGGGAAGACGCCG
CCGGTGCAGACCTGCGAGATCGTGACCTTCCATCTCGCTGAAAGCATGGTACGCGAGAGTCAGAGTCTGGCGTTATTGCT
GTATTCGCCGCGCAAGGTACGCGAACTGCCGCCGGGGCTCGTGCGCGTGCCGGTGACGTTGCCGGACAACCGACGACACA
TCGGCGTGACCTATCGGCGCGACGCGGGGCTGAGCTTCACGCAGCGGCAATTCATCGATGGCCTGGCCAAACGGTTCGCG
TCCGATGACGACGCCGAGGGGAATGCACCCTAG

Upstream 100 bases:

>100_bases
TCTTGACGTTAGGGGAAAAAAGAGAGGGCGTCTCATGCGGAAATGAAATAGCGCTTTGCATCTTTGATATAGTCAAAATC
GGCTGCCAAGAGTCTCGATA

Downstream 100 bases:

>100_bases
GGACGCATGACAGGAAACCGCAGGGGGTTTCCTGCCATCCGTGGCGCGTTCTTCACGACCTTCACGGCGTTTACGTCAGG
ACGCCTCGCTCACGGTCGAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Galactose-binding protein regulator; GBP regulator [H]

Number of amino acids: Translated: 410; Mature: 409

Protein sequence:

>410_residues
MSHDTVSPGLSLREIRAILAVAEQRGFSSAARRLNISQSSLSRTIHRAESVLAIRLFQRGWGGAEPTPEGEIVRQHCTQV
MAELLHERDALMAAGLTRLPLPLDLRWRDLACVAAVVHTGKTTTAAKWLRTSQSSVSRTLGAISVRLGSPLFQRSGEGLR
AEPLAERLVALRDRMCARMQPLQERLGHLAGEVTGRLAVGMTPFCEQERVAQAFGDLLVAYPQLRLSAVTGSYVMLTDAL
RCGEIDLVVGLLRELGEDDELAELPLAEEAITVLARSDHPCAVRSVSMEDLARQTWIVAPAGTPIRAYFERLFLGMGKTP
PVQTCEIVTFHLAESMVRESQSLALLLYSPRKVRELPPGLVRVPVTLPDNRRHIGVTYRRDAGLSFTQRQFIDGLAKRFA
SDDDAEGNAP

Sequences:

>Translated_410_residues
MSHDTVSPGLSLREIRAILAVAEQRGFSSAARRLNISQSSLSRTIHRAESVLAIRLFQRGWGGAEPTPEGEIVRQHCTQV
MAELLHERDALMAAGLTRLPLPLDLRWRDLACVAAVVHTGKTTTAAKWLRTSQSSVSRTLGAISVRLGSPLFQRSGEGLR
AEPLAERLVALRDRMCARMQPLQERLGHLAGEVTGRLAVGMTPFCEQERVAQAFGDLLVAYPQLRLSAVTGSYVMLTDAL
RCGEIDLVVGLLRELGEDDELAELPLAEEAITVLARSDHPCAVRSVSMEDLARQTWIVAPAGTPIRAYFERLFLGMGKTP
PVQTCEIVTFHLAESMVRESQSLALLLYSPRKVRELPPGLVRVPVTLPDNRRHIGVTYRRDAGLSFTQRQFIDGLAKRFA
SDDDAEGNAP
>Mature_409_residues
SHDTVSPGLSLREIRAILAVAEQRGFSSAARRLNISQSSLSRTIHRAESVLAIRLFQRGWGGAEPTPEGEIVRQHCTQVM
AELLHERDALMAAGLTRLPLPLDLRWRDLACVAAVVHTGKTTTAAKWLRTSQSSVSRTLGAISVRLGSPLFQRSGEGLRA
EPLAERLVALRDRMCARMQPLQERLGHLAGEVTGRLAVGMTPFCEQERVAQAFGDLLVAYPQLRLSAVTGSYVMLTDALR
CGEIDLVVGLLRELGEDDELAELPLAEEAITVLARSDHPCAVRSVSMEDLARQTWIVAPAGTPIRAYFERLFLGMGKTPP
VQTCEIVTFHLAESMVRESQSLALLLYSPRKVRELPPGLVRVPVTLPDNRRHIGVTYRRDAGLSFTQRQFIDGLAKRFAS
DDDAEGNAP

Specific function: Does not seem to be required for sbpA expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=291, Percent_Identity=23.0240549828179, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 45052; Mature: 44920

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHDTVSPGLSLREIRAILAVAEQRGFSSAARRLNISQSSLSRTIHRAESVLAIRLFQRG
CCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
WGGAEPTPEGEIVRQHCTQVMAELLHERDALMAAGLTRLPLPLDLRWRDLACVAAVVHTG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHHHHCC
KTTTAAKWLRTSQSSVSRTLGAISVRLGSPLFQRSGEGLRAEPLAERLVALRDRMCARMQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
PLQERLGHLAGEVTGRLAVGMTPFCEQERVAQAFGDLLVAYPQLRLSAVTGSYVMLTDAL
HHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHEEHHCCCEEEEHHHH
RCGEIDLVVGLLRELGEDDELAELPLAEEAITVLARSDHPCAVRSVSMEDLARQTWIVAP
CCCHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCHHHCCCHHHHHHHCEEEEC
AGTPIRAYFERLFLGMGKTPPVQTCEIVTFHLAESMVRESQSLALLLYSPRKVRELPPGL
CCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCE
VRVPVTLPDNRRHIGVTYRRDAGLSFTQRQFIDGLAKRFASDDDAEGNAP
EEEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SHDTVSPGLSLREIRAILAVAEQRGFSSAARRLNISQSSLSRTIHRAESVLAIRLFQRG
CCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
WGGAEPTPEGEIVRQHCTQVMAELLHERDALMAAGLTRLPLPLDLRWRDLACVAAVVHTG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHHHHCC
KTTTAAKWLRTSQSSVSRTLGAISVRLGSPLFQRSGEGLRAEPLAERLVALRDRMCARMQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
PLQERLGHLAGEVTGRLAVGMTPFCEQERVAQAFGDLLVAYPQLRLSAVTGSYVMLTDAL
HHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHEEHHCCCEEEEHHHH
RCGEIDLVVGLLRELGEDDELAELPLAEEAITVLARSDHPCAVRSVSMEDLARQTWIVAP
CCCHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCCHHHCCCHHHHHHHCEEEEC
AGTPIRAYFERLFLGMGKTPPVQTCEIVTFHLAESMVRESQSLALLLYSPRKVRELPPGL
CCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCE
VRVPVTLPDNRRHIGVTYRRDAGLSFTQRQFIDGLAKRFASDDDAEGNAP
EEEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10361275 [H]