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The map label for this gene is ydhC [H]

Identifier: 92112478

GI number: 92112478

Start: 385579

End: 386295

Strand: Direct

Name: ydhC [H]

Synonym: Csal_0345

Alternate gene names: 92112478

Gene position: 385579-386295 (Clockwise)

Preceding gene: 92112471

Following gene: 92112480

Centisome position: 10.43

GC content: 65.83

Gene sequence:

>717_bases
ATGCCGGAAAAATCGGAAAAAAATGGTCGCCTCAATGTCATCGCCAGTTTGCGCAAGCTCATCAGCGAAGGAGTCTACGC
GCCCGGCGAGCGCCTCAAGGAGCTGCATGTCGCCGAACGGCTCCAGGTATCGCGCATGCCGGTGCGGCTGGCCTTCCGCA
CGCTCGAGCAGGAGGGGCTGCTGCAGAAGACCGGGACCCGCGGCTATGTCGTGCGTCAGTTCTCCGAAGAGGACGTGCTC
TGTGCGGTGGAGGTGCGCGGGGCCCTGGAGGGGCTGGCGGCGCGCCGTCTGGCCGAACAGGGCGTGCCGCAGGAGGTCGA
GGCCCAGTTGCGCGATTGCCTGTCACGGGGCGAGGCGCTGCTGGAAAAGGGGTATCTCGTCAAGGCGGATATCGAGCTCT
GGGCCACCCTCAACCAGGAGTTTCATCGTGCCATCGTCGGTGCCACCGGCAGCCGTGTGATCCACGATGCAATCGCGCGC
AACGACCATCTGCCCTTCGCCTCGGCCGATTCGATCATCATCGATGACGCGGCGCTGGATCGCGAATACGGCAAGTTGCG
CATGGCGCATGCCCAGCACCAGCTCGTGTTCCAGGCGCTATCGCGCGGCGAGGGAGCCCGGGCGGAGATGCTGATGCGCG
AGCATGCCTACATCGGGCTGCGGTACGGCACGCTGTTCGGGCTGGGCGGCGTGGGGCAAGCGCCGAACGCGACATGA

Upstream 100 bases:

>100_bases
TTATTATTCTTTGGATCCAAAGTAAAGGTTTTAAGGCCTCCCAGCGTCAAGTTAGCCTTTAGTTGGATCCAAAAATGGGA
GCATCGACAGGAGCGCGTAG

Downstream 100 bases:

>100_bases
GGTCTTTGGATCCAAAGCGGCTGCGGGGCCGCTGTCGTCAGCCTCATGCCTGACGCTGGCGGAATTCCTTCGGGGAACAG
GCGACATGGCGTTTGAAGAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MPEKSEKNGRLNVIASLRKLISEGVYAPGERLKELHVAERLQVSRMPVRLAFRTLEQEGLLQKTGTRGYVVRQFSEEDVL
CAVEVRGALEGLAARRLAEQGVPQEVEAQLRDCLSRGEALLEKGYLVKADIELWATLNQEFHRAIVGATGSRVIHDAIAR
NDHLPFASADSIIIDDAALDREYGKLRMAHAQHQLVFQALSRGEGARAEMLMREHAYIGLRYGTLFGLGGVGQAPNAT

Sequences:

>Translated_238_residues
MPEKSEKNGRLNVIASLRKLISEGVYAPGERLKELHVAERLQVSRMPVRLAFRTLEQEGLLQKTGTRGYVVRQFSEEDVL
CAVEVRGALEGLAARRLAEQGVPQEVEAQLRDCLSRGEALLEKGYLVKADIELWATLNQEFHRAIVGATGSRVIHDAIAR
NDHLPFASADSIIIDDAALDREYGKLRMAHAQHQLVFQALSRGEGARAEMLMREHAYIGLRYGTLFGLGGVGQAPNAT
>Mature_237_residues
PEKSEKNGRLNVIASLRKLISEGVYAPGERLKELHVAERLQVSRMPVRLAFRTLEQEGLLQKTGTRGYVVRQFSEEDVLC
AVEVRGALEGLAARRLAEQGVPQEVEAQLRDCLSRGEALLEKGYLVKADIELWATLNQEFHRAIVGATGSRVIHDAIARN
DHLPFASADSIIIDDAALDREYGKLRMAHAQHQLVFQALSRGEGARAEMLMREHAYIGLRYGTLFGLGGVGQAPNAT

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26310; Mature: 26178

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEKSEKNGRLNVIASLRKLISEGVYAPGERLKELHVAERLQVSRMPVRLAFRTLEQEGL
CCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCH
LQKTGTRGYVVRQFSEEDVLCAVEVRGALEGLAARRLAEQGVPQEVEAQLRDCLSRGEAL
HHHCCCCCEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LEKGYLVKADIELWATLNQEFHRAIVGATGSRVIHDAIARNDHLPFASADSIIIDDAALD
HHCCCEEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCEEEEHHHHH
REYGKLRMAHAQHQLVFQALSRGEGARAEMLMREHAYIGLRYGTLFGLGGVGQAPNAT
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEEEHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
PEKSEKNGRLNVIASLRKLISEGVYAPGERLKELHVAERLQVSRMPVRLAFRTLEQEGL
CCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCH
LQKTGTRGYVVRQFSEEDVLCAVEVRGALEGLAARRLAEQGVPQEVEAQLRDCLSRGEAL
HHHCCCCCEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LEKGYLVKADIELWATLNQEFHRAIVGATGSRVIHDAIARNDHLPFASADSIIIDDAALD
HHCCCEEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCEEEEHHHHH
REYGKLRMAHAQHQLVFQALSRGEGARAEMLMREHAYIGLRYGTLFGLGGVGQAPNAT
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEEEHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]