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The map label for this gene is ygcI [H]

Identifier: 92112365

GI number: 92112365

Start: 261855

End: 262637

Strand: Direct

Name: ygcI [H]

Synonym: Csal_0230

Alternate gene names: 92112365

Gene position: 261855-262637 (Clockwise)

Preceding gene: 92112364

Following gene: 92112366

Centisome position: 7.08

GC content: 64.62

Gene sequence:

>783_bases
ATGACGGGACATCTGGTCTTTCGGCTCTATGCGCCGATGGCGAGCTGGGGCGAAGCTGCGGTAGGGGAGGCGCGGCCGAC
CGCGACGTACCCCGGGCGCGGCGCCATCCTCGGCTTGATCGGCGCTGCACTTGGCATCCGGCGCGACGATGACGAGGGGC
AACTAAGGCTTCGGCAAAGCCTGGGCATCGCGGTCAAACAGCGCTCTCCAGGCTGGCTGCTACGCGACTACCACACCGTG
CAGGTGCCACCTTCACAATCGAAGGTGAACTACCGTTCGCGGCGTGAAGAACTTTCGGTGCCCAAGGATGCCCTCAATAC
CATTCTCTCTTCCCGGGACTATCGCTGTGATGGCCTGTGGGTCGTGGCGCTGCGTCTGATGCCCGACGCGGTCTGGACAC
TGGACGAACTCAAGAGCGCGCTGGAGAGGCCTCGCTTCACGCTCTATCTCGGCCGTAAGGCATGCCCCCTGGCGGCACCG
CTCACGCCCGCCATCGTGGAGGCGGATCACTGGCGCGGGGCGCTGGATCACGGCTTTGACAGCGCAACCGATCCCGAAAG
GACATGGTTGCCGCTCATCGGTAACGAAGCACAAGACCTACGCTTGCTGAGGCTGCCCGGTCAGGTGCTCTATGCCTGGG
AAGGCGAGGCAGATGCACTAGACGGTAACGCCGACATGGCGGAGTCCAGCGAGACCTGGGATGAACCGCTGCATCGCCGC
CGCTGGCAGTTCGGGGCGCGTCTCGAGCACCGCCGAATCGAGTCGGTGGAGGGGCAGAGCTAA

Upstream 100 bases:

>100_bases
AGCCGGATTATGAAAAGCCTCCGCTGAAGGGTGACGTCCAAACGGGAAATCTGCAGGACCTGCTGACTTTCCTCAAGGGC
GATGACTAAGCGGAGGCGAT

Downstream 100 bases:

>100_bases
TGTATCTTTCAAGTGTCAGAGTCGACCTCAACGCCCTTACCCGAGAACAGCTTTTCGATGTGCTGGAAGGCGGGGCCTAT
ACGGCCCACCAACTGCTCTG

Product: CRISPR-associated Cas5e family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MTGHLVFRLYAPMASWGEAAVGEARPTATYPGRGAILGLIGAALGIRRDDDEGQLRLRQSLGIAVKQRSPGWLLRDYHTV
QVPPSQSKVNYRSRREELSVPKDALNTILSSRDYRCDGLWVVALRLMPDAVWTLDELKSALERPRFTLYLGRKACPLAAP
LTPAIVEADHWRGALDHGFDSATDPERTWLPLIGNEAQDLRLLRLPGQVLYAWEGEADALDGNADMAESSETWDEPLHRR
RWQFGARLEHRRIESVEGQS

Sequences:

>Translated_260_residues
MTGHLVFRLYAPMASWGEAAVGEARPTATYPGRGAILGLIGAALGIRRDDDEGQLRLRQSLGIAVKQRSPGWLLRDYHTV
QVPPSQSKVNYRSRREELSVPKDALNTILSSRDYRCDGLWVVALRLMPDAVWTLDELKSALERPRFTLYLGRKACPLAAP
LTPAIVEADHWRGALDHGFDSATDPERTWLPLIGNEAQDLRLLRLPGQVLYAWEGEADALDGNADMAESSETWDEPLHRR
RWQFGARLEHRRIESVEGQS
>Mature_259_residues
TGHLVFRLYAPMASWGEAAVGEARPTATYPGRGAILGLIGAALGIRRDDDEGQLRLRQSLGIAVKQRSPGWLLRDYHTVQ
VPPSQSKVNYRSRREELSVPKDALNTILSSRDYRCDGLWVVALRLMPDAVWTLDELKSALERPRFTLYLGRKACPLAAPL
TPAIVEADHWRGALDHGFDSATDPERTWLPLIGNEAQDLRLLRLPGQVLYAWEGEADALDGNADMAESSETWDEPLHRRR
WQFGARLEHRRIESVEGQS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082154, Length=183, Percent_Identity=37.1584699453552, Blast_Score=93, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021124
- InterPro:   IPR013422
- InterPro:   IPR010147 [H]

Pfam domain/function: PF09704 Cas_Cas5d [H]

EC number: NA

Molecular weight: Translated: 29200; Mature: 29069

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGHLVFRLYAPMASWGEAAVGEARPTATYPGRGAILGLIGAALGIRRDDDEGQLRLRQS
CCCEEEEEEECCHHHCCCHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHH
LGIAVKQRSPGWLLRDYHTVQVPPSQSKVNYRSRREELSVPKDALNTILSSRDYRCDGLW
CCEEEEECCCCCEEECCEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCHHH
VVALRLMPDAVWTLDELKSALERPRFTLYLGRKACPLAAPLTPAIVEADHWRGALDHGFD
HHHHHHHCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHEECHHCCCHHHCCCC
SATDPERTWLPLIGNEAQDLRLLRLPGQVLYAWEGEADALDGNADMAESSETWDEPLHRR
CCCCCCCEEECEECCCHHHEEEEECCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
RWQFGARLEHRRIESVEGQS
HHHHCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
TGHLVFRLYAPMASWGEAAVGEARPTATYPGRGAILGLIGAALGIRRDDDEGQLRLRQS
CCEEEEEEECCHHHCCCHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHH
LGIAVKQRSPGWLLRDYHTVQVPPSQSKVNYRSRREELSVPKDALNTILSSRDYRCDGLW
CCEEEEECCCCCEEECCEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCHHH
VVALRLMPDAVWTLDELKSALERPRFTLYLGRKACPLAAPLTPAIVEADHWRGALDHGFD
HHHHHHHCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHEECHHCCCHHHCCCC
SATDPERTWLPLIGNEAQDLRLLRLPGQVLYAWEGEADALDGNADMAESSETWDEPLHRR
CCCCCCCEEECEECCCHHHEEEEECCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
RWQFGARLEHRRIESVEGQS
HHHHCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]