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The map label for this gene is yliC [C]

Identifier: 92112346

GI number: 92112346

Start: 234482

End: 235408

Strand: Direct

Name: yliC [C]

Synonym: Csal_0211

Alternate gene names: 92112346

Gene position: 234482-235408 (Clockwise)

Preceding gene: 92112345

Following gene: 92112347

Centisome position: 6.34

GC content: 62.78

Gene sequence:

>927_bases
ATGGTCTGGTATATCGCCAAGCGCATCGCCTATTCGCTGCTCATCCTGCTGGGTGTGACCTTCATCACCTACCTGCTGCT
CTACATGATTCCGGCCGACCCTGCTCGTCAGATTGCCGGCCGCAGCGCCACCGCCGAGGTAGTGGCCAACATCCGTCACC
AACTGGGGCTGGATCTGCCTTTCTACGAACAGTACGTCCGCTATCTGGGCAACTTGCTGCAGGGTGACCTGGGGCGATCC
TACGTGCAGCGCTCGGAGGTCTCGACGCTACTCGCCGCTCGGGTGGGCCCGACGCTGCAACTGATGGCTGCCGGCATCGG
CTTCGAGCTGCTGATCGGCATCACGCTGGGTATCGTCGCGGCGCTCAAGCGTAATTCGGTGCTCGACCAGGTACTGATGG
CATTCTCGTTCATCGGCGTTTCCTCGCCGCATTTCATCGCCGCGATGCTGGCGCTGTATTTCTTTGCGGTCTATCTCGGC
TGGTTCCCATTGGGCGGATACGGCGGCGTCGAACACCTGCTGTTGCCGGCCATCACCCTCGGTGTGCTGGGCAGCGGCTG
GTACTCACGCATGGTGCGCTCGTCGATGATCGATGTGCTGCACCAGGACTTCATTCGCACCGCGCGCGCCAAGGGGTTGG
GGCGGGTGCGCGTTCTGCTGCGCCACGTGCTGCCCAACGCCATCGTGCCGGTGATCCCCATGATCGGGATCGACATCGGC
ATCTTCATGAGCGGGCTGGTCGTCGTGGAGTCGGTGTTCGGCTGGCCGGGCCTGGGGCAATTGGCCTGGCAGGCCATTCA
GCAGGTGGATATTCCGATCATCGTGGGCGTCACCATGCTCTCGGCGGTCGCCATCGTGCTGGGCAATCTCGTGGCCGATC
TGGCCGTGCTGTTCGTCGATCCGCGCATCGACGTCACTCAAACCTGA

Upstream 100 bases:

>100_bases
TGTTTCCCGGCATCGCCATCATCGCGCTGTCACTGAGCTTCAATCTGGTCGGCGACGCGCTGCGCGACGAGCTCGACCCG
ACACTCAAAGGAAGACGCTA

Downstream 100 bases:

>100_bases
ACCTCAAGGGAACAATGCCATGAACAACAAATTGAAAGGCTTCGCACTCACCGCTCTGTGCGCGACGATCTCGAGCCAGG
CGCTGGCGCAACAGACACCT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MVWYIAKRIAYSLLILLGVTFITYLLLYMIPADPARQIAGRSATAEVVANIRHQLGLDLPFYEQYVRYLGNLLQGDLGRS
YVQRSEVSTLLAARVGPTLQLMAAGIGFELLIGITLGIVAALKRNSVLDQVLMAFSFIGVSSPHFIAAMLALYFFAVYLG
WFPLGGYGGVEHLLLPAITLGVLGSGWYSRMVRSSMIDVLHQDFIRTARAKGLGRVRVLLRHVLPNAIVPVIPMIGIDIG
IFMSGLVVVESVFGWPGLGQLAWQAIQQVDIPIIVGVTMLSAVAIVLGNLVADLAVLFVDPRIDVTQT

Sequences:

>Translated_308_residues
MVWYIAKRIAYSLLILLGVTFITYLLLYMIPADPARQIAGRSATAEVVANIRHQLGLDLPFYEQYVRYLGNLLQGDLGRS
YVQRSEVSTLLAARVGPTLQLMAAGIGFELLIGITLGIVAALKRNSVLDQVLMAFSFIGVSSPHFIAAMLALYFFAVYLG
WFPLGGYGGVEHLLLPAITLGVLGSGWYSRMVRSSMIDVLHQDFIRTARAKGLGRVRVLLRHVLPNAIVPVIPMIGIDIG
IFMSGLVVVESVFGWPGLGQLAWQAIQQVDIPIIVGVTMLSAVAIVLGNLVADLAVLFVDPRIDVTQT
>Mature_308_residues
MVWYIAKRIAYSLLILLGVTFITYLLLYMIPADPARQIAGRSATAEVVANIRHQLGLDLPFYEQYVRYLGNLLQGDLGRS
YVQRSEVSTLLAARVGPTLQLMAAGIGFELLIGITLGIVAALKRNSVLDQVLMAFSFIGVSSPHFIAAMLALYFFAVYLG
WFPLGGYGGVEHLLLPAITLGVLGSGWYSRMVRSSMIDVLHQDFIRTARAKGLGRVRVLLRHVLPNAIVPVIPMIGIDIG
IFMSGLVVVESVFGWPGLGQLAWQAIQQVDIPIIVGVTMLSAVAIVLGNLVADLAVLFVDPRIDVTQT

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=303, Percent_Identity=39.6039603960396, Blast_Score=228, Evalue=4e-61,
Organism=Escherichia coli, GI1789965, Length=335, Percent_Identity=34.6268656716418, Blast_Score=199, Evalue=3e-52,
Organism=Escherichia coli, GI1789888, Length=306, Percent_Identity=35.2941176470588, Blast_Score=183, Evalue=1e-47,
Organism=Escherichia coli, GI1787761, Length=331, Percent_Identity=36.8580060422961, Blast_Score=180, Evalue=9e-47,
Organism=Escherichia coli, GI1787497, Length=306, Percent_Identity=33.0065359477124, Blast_Score=171, Evalue=7e-44,
Organism=Escherichia coli, GI1787550, Length=271, Percent_Identity=28.0442804428044, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1788504, Length=284, Percent_Identity=30.6338028169014, Blast_Score=122, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33520; Mature: 33520

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVWYIAKRIAYSLLILLGVTFITYLLLYMIPADPARQIAGRSATAEVVANIRHQLGLDLP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCH
FYEQYVRYLGNLLQGDLGRSYVQRSEVSTLLAARVGPTLQLMAAGIGFELLIGITLGIVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
ALKRNSVLDQVLMAFSFIGVSSPHFIAAMLALYFFAVYLGWFPLGGYGGVEHLLLPAITL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
GVLGSGWYSRMVRSSMIDVLHQDFIRTARAKGLGRVRVLLRHVLPNAIVPVIPMIGIDIG
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFMSGLVVVESVFGWPGLGQLAWQAIQQVDIPIIVGVTMLSAVAIVLGNLVADLAVLFVD
HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PRIDVTQT
CCCCCCCC
>Mature Secondary Structure
MVWYIAKRIAYSLLILLGVTFITYLLLYMIPADPARQIAGRSATAEVVANIRHQLGLDLP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCH
FYEQYVRYLGNLLQGDLGRSYVQRSEVSTLLAARVGPTLQLMAAGIGFELLIGITLGIVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
ALKRNSVLDQVLMAFSFIGVSSPHFIAAMLALYFFAVYLGWFPLGGYGGVEHLLLPAITL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
GVLGSGWYSRMVRSSMIDVLHQDFIRTARAKGLGRVRVLLRHVLPNAIVPVIPMIGIDIG
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFMSGLVVVESVFGWPGLGQLAWQAIQQVDIPIIVGVTMLSAVAIVLGNLVADLAVLFVD
HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PRIDVTQT
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA