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The map label for this gene is yqgF [C]

Identifier: 92112194

GI number: 92112194

Start: 78474

End: 78920

Strand: Direct

Name: yqgF [C]

Synonym: Csal_0059

Alternate gene names: 92112194

Gene position: 78474-78920 (Clockwise)

Preceding gene: 92112193

Following gene: 92112197

Centisome position: 2.12

GC content: 69.35

Gene sequence:

>447_bases
ATGGCCGAGGCCGGACAACGGCTGGTGCTGGCGTTCGACTTCGGGACGCGGCGCATCGGCGTGGCGGTGGGTAACGAAAT
GCTGGGCAGCGCCACGGCGTTGGCGCCGTTGCCCGCGCGTGACGGCATCCCCGACTGGCAGCAGATCGCGGCGCTGCTCG
AGGAGTGGCAGCCGGACCTGCTGGTGGTGGGGCTGCCGCTCAACATGGACGGCACCGAGTCGGACATGAGTCGGCGGGCG
CGCAAGTTCGGCAATCGCCTGCACGGGCGCTTCGGCAAGCCGGTGGAGGTGTTCGACGAACGCGGCTCCACGCGTGCCGC
CAAGCGCATCGCCCGCGACGCCGGGCACCGCGGCAACTATCGTGACGATGGCGTGGACGGCATCGCCGCGCAGTTGATCC
TGGAAAGCTTCTTCGCCGACGACACCTTCCTGCAACGCATGCCGTGA

Upstream 100 bases:

>100_bases
CGATTCTGTTCGAGGTCCACGCGGAGCAGCGCCTGAGCGCGGCGGCGGGGATACTCGGCATCGACCTGAACCTGATGAGC
CGCGAGGCGGGGCATTCCTG

Downstream 100 bases:

>100_bases
CGCACCACGACCGGCCAGGAGCCGGTCGTGATGTCATGCGCGATCGGTGGCGTGCGCATCAACCATCCATGTGCAGTTCC
GGCGTGGGCCGGCTGAAGCC

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 147

Protein sequence:

>148_residues
MAEAGQRLVLAFDFGTRRIGVAVGNEMLGSATALAPLPARDGIPDWQQIAALLEEWQPDLLVVGLPLNMDGTESDMSRRA
RKFGNRLHGRFGKPVEVFDERGSTRAAKRIARDAGHRGNYRDDGVDGIAAQLILESFFADDTFLQRMP

Sequences:

>Translated_148_residues
MAEAGQRLVLAFDFGTRRIGVAVGNEMLGSATALAPLPARDGIPDWQQIAALLEEWQPDLLVVGLPLNMDGTESDMSRRA
RKFGNRLHGRFGKPVEVFDERGSTRAAKRIARDAGHRGNYRDDGVDGIAAQLILESFFADDTFLQRMP
>Mature_147_residues
AEAGQRLVLAFDFGTRRIGVAVGNEMLGSATALAPLPARDGIPDWQQIAALLEEWQPDLLVVGLPLNMDGTESDMSRRAR
KFGNRLHGRFGKPVEVFDERGSTRAAKRIARDAGHRGNYRDDGVDGIAAQLILESFFADDTFLQRMP

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=130, Percent_Identity=53.0769230769231, Blast_Score=136, Evalue=5e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_CHRSD (Q1R1I5)

Other databases:

- EMBL:   CP000285
- RefSeq:   YP_572122.1
- ProteinModelPortal:   Q1R1I5
- SMR:   Q1R1I5
- STRING:   Q1R1I5
- GeneID:   4027238
- GenomeReviews:   CP000285_GR
- KEGG:   csa:Csal_0059
- NMPDR:   fig|290398.4.peg.295
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   ESYFENQ
- ProtClustDB:   PRK00109
- BioCyc:   CSAL290398:CSAL_0059-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 16282; Mature: 16150

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEAGQRLVLAFDFGTRRIGVAVGNEMLGSATALAPLPARDGIPDWQQIAALLEEWQPDL
CCCCCCEEEEEEECCCCEEHHHHCHHHHCCHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE
LVVGLPLNMDGTESDMSRRARKFGNRLHGRFGKPVEVFDERGSTRAAKRIARDAGHRGNY
EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCC
RDDGVDGIAAQLILESFFADDTFLQRMP
CCCCHHHHHHHHHHHHHHCCCHHHHCCC
>Mature Secondary Structure 
AEAGQRLVLAFDFGTRRIGVAVGNEMLGSATALAPLPARDGIPDWQQIAALLEEWQPDL
CCCCCEEEEEEECCCCEEHHHHCHHHHCCHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE
LVVGLPLNMDGTESDMSRRARKFGNRLHGRFGKPVEVFDERGSTRAAKRIARDAGHRGNY
EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCC
RDDGVDGIAAQLILESFFADDTFLQRMP
CCCCHHHHHHHHHHHHHHCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA