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The map label for this gene is (hspc4-1 [H]

Identifier: 92109671

GI number: 92109671

Start: 9433

End: 9933

Strand: Reverse

Name: (hspc4-1 [H]

Synonym: Nham_4550

Alternate gene names: 92109671

Gene position: 9933-9433 (Counterclockwise)

Preceding gene: 92109672

Following gene: 92109670

Centisome position: 8.18

GC content: 57.09

Gene sequence:

>501_bases
ATGGGTATCAAAGATCTCATTCCCTGGAATAACGGCGGACGCGAAGTCACCATCCATCGTGGTGCCGACGTGAATCCGTT
TTTTACGTTGCATCGCGAGATGAACCGCATCTTCGACGATGTATTCCGCGGGTTCGATCTTGCGCCGTTCGGATCGCCCC
CACGACTGAGCGGGCTCGGCTGGCCTCAGATCGACATCGATGAGACGGACAAGGAGGTGCGCATCACAGCCGAACTGCCC
GGGCTCGATGAGAAGGACGTCAGCCTAGAAATCGCAAATGGCGTTCTTTCGATCTCCGGCGAGAAAAAATCGGAATCGGA
AGACAAGGCACGGCGTTTCAGCGAGCGGTACTACGGCCGGTTCGAACGGCGCATACAACTGCAGGATATCGAGGAGGACA
AGGCCTCGGCCGCCTTCAAGAATGGCGTGCTGACCGTCACGGTGCCGAAATCGGTCGAAGCGAAGAATGTCCGCCGCATC
GCGATCAATCGCAATGACTGA

Upstream 100 bases:

>100_bases
GACAAGGCGGCCTGACCGCGAAGCAACGCTCGCATCGGCAAAGAACAGATTTCCGCAGCGGTTCGCGGCGGAAGTCGCTT
GAATCGAGGAGAATAACGCT

Downstream 100 bases:

>100_bases
CACTTTCCAACGTCCGGGCGTTCAATCGGCGGTCGTCCGGTTGATTAATGGTGACGGGCGGTTGGCGCAGCCTCTTCGAA
ACCGCCCGAGTGCTGAGGGA

Product: heat shock protein Hsp20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MGIKDLIPWNNGGREVTIHRGADVNPFFTLHREMNRIFDDVFRGFDLAPFGSPPRLSGLGWPQIDIDETDKEVRITAELP
GLDEKDVSLEIANGVLSISGEKKSESEDKARRFSERYYGRFERRIQLQDIEEDKASAAFKNGVLTVTVPKSVEAKNVRRI
AINRND

Sequences:

>Translated_166_residues
MGIKDLIPWNNGGREVTIHRGADVNPFFTLHREMNRIFDDVFRGFDLAPFGSPPRLSGLGWPQIDIDETDKEVRITAELP
GLDEKDVSLEIANGVLSISGEKKSESEDKARRFSERYYGRFERRIQLQDIEEDKASAAFKNGVLTVTVPKSVEAKNVRRI
AINRND
>Mature_165_residues
GIKDLIPWNNGGREVTIHRGADVNPFFTLHREMNRIFDDVFRGFDLAPFGSPPRLSGLGWPQIDIDETDKEVRITAELPG
LDEKDVSLEIANGVLSISGEKKSESEDKARRFSERYYGRFERRIQLQDIEEDKASAAFKNGVLTVTVPKSVEAKNVRRIA
INRND

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 18831; Mature: 18700

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIKDLIPWNNGGREVTIHRGADVNPFFTLHREMNRIFDDVFRGFDLAPFGSPPRLSGLG
CCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
WPQIDIDETDKEVRITAELPGLDEKDVSLEIANGVLSISGEKKSESEDKARRFSERYYGR
CCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHH
FERRIQLQDIEEDKASAAFKNGVLTVTVPKSVEAKNVRRIAINRND
HHHEEEECCCCCHHHHHHHHCCEEEEEECCCCCCCCEEEEEEECCC
>Mature Secondary Structure 
GIKDLIPWNNGGREVTIHRGADVNPFFTLHREMNRIFDDVFRGFDLAPFGSPPRLSGLG
CCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
WPQIDIDETDKEVRITAELPGLDEKDVSLEIANGVLSISGEKKSESEDKARRFSERYYGR
CCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHH
FERRIQLQDIEEDKASAAFKNGVLTVTVPKSVEAKNVRRIAINRND
HHHEEEECCCCCHHHHHHHHCCEEEEEECCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA