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The map label for this gene is ycgR1 [H]

Identifier: 91785628

GI number: 91785628

Start: 4686660

End: 4687433

Strand: Reverse

Name: ycgR1 [H]

Synonym: Bxe_A0149

Alternate gene names: 91785628

Gene position: 4687433-4686660 (Counterclockwise)

Preceding gene: 91785629

Following gene: 91785627

Centisome position: 95.74

GC content: 64.73

Gene sequence:

>774_bases
ATGGATACTAACCAGTCGAACGGCCAGACCGACACGCCCGGCCAGCCGCACGCACCGACCGACGAAAGCGGCAACGATTT
TGGCCGTCGCAATCCGCTGGAGATCGGCGTTCAGTTGCGCAATCTCGTCAATCGCGGCGATTTCCTCACCGTTCAGTACG
CGGGCGGACAACTCGTGACCCGTCTGCTCGACGTCGACGTGCGCGGGCGCACCTTCACGTTCGATTGGGGCGCACTGTCC
CATCAGAACAAAGGCCTGCTCAGCGCGCCGCGCTGCCAGTTCCACGCACAGCCGGACGGCGTGCGCGTCGAATTCGCCAC
CAGCACGCCGCGCGAAACCCGTTTCGAAGGACTGCCCGCATTCGAGGCCGACTTCCCCGAGGTGCTGTTCTACGTGCAGC
GCCGCGAGTATTTCCGTGTCGATGCGCCGATTCTCGACCCGTACATGTGCACCGGCCTTCTGCCCGAAGGCGACACGTTC
CGCTTCGAAGTGCACGACCTTTCGCTGGGCGGCGTCGGCATGCGCACCACCGACGAACGCGTGGCCGAATTGCCGATGGG
CACGCGCCTGATGGATTGCGAGCTGGCGCTCGGCGCGCTCGGCCGGCTCTCGCTCGATCTGCAGCTCGTGTCGCATCGTT
CCACCGCGCTGCCCAACGGCACGCAGCGTTATCAACTCGGCTTCCGCTTCCTGACGCTGCCGGGCAGTGCGGAAAACACG
CTGCAACGTCTGATTACGCAGCTCGAAATGAAGCGCCGTTCGCTGGTGCGCTGA

Upstream 100 bases:

>100_bases
TCCGGTTTGACGCGCGTGCCGCGGCTTCGATGAAGACCGCGCGAAAGCCCCGGCAGGAGCCCTGGCACGCGCCCGCAAGA
ACAAGCATACCGGCAAGCCC

Downstream 100 bases:

>100_bases
CTGGAAAATACTGGATCAGCGGCGCGCGAGTGTGCCTGCTCGCGCACCGTTCGCTTGCCGCTTCGTCACCACTGCCTCAC
CACCTGTTTTCCGCACCGTC

Product: hypothetical protein

Products: NA

Alternate protein names: Cyclic di-GMP binding protein YcgR 1 [H]

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MDTNQSNGQTDTPGQPHAPTDESGNDFGRRNPLEIGVQLRNLVNRGDFLTVQYAGGQLVTRLLDVDVRGRTFTFDWGALS
HQNKGLLSAPRCQFHAQPDGVRVEFATSTPRETRFEGLPAFEADFPEVLFYVQRREYFRVDAPILDPYMCTGLLPEGDTF
RFEVHDLSLGGVGMRTTDERVAELPMGTRLMDCELALGALGRLSLDLQLVSHRSTALPNGTQRYQLGFRFLTLPGSAENT
LQRLITQLEMKRRSLVR

Sequences:

>Translated_257_residues
MDTNQSNGQTDTPGQPHAPTDESGNDFGRRNPLEIGVQLRNLVNRGDFLTVQYAGGQLVTRLLDVDVRGRTFTFDWGALS
HQNKGLLSAPRCQFHAQPDGVRVEFATSTPRETRFEGLPAFEADFPEVLFYVQRREYFRVDAPILDPYMCTGLLPEGDTF
RFEVHDLSLGGVGMRTTDERVAELPMGTRLMDCELALGALGRLSLDLQLVSHRSTALPNGTQRYQLGFRFLTLPGSAENT
LQRLITQLEMKRRSLVR
>Mature_257_residues
MDTNQSNGQTDTPGQPHAPTDESGNDFGRRNPLEIGVQLRNLVNRGDFLTVQYAGGQLVTRLLDVDVRGRTFTFDWGALS
HQNKGLLSAPRCQFHAQPDGVRVEFATSTPRETRFEGLPAFEADFPEVLFYVQRREYFRVDAPILDPYMCTGLLPEGDTF
RFEVHDLSLGGVGMRTTDERVAELPMGTRLMDCELALGALGRLSLDLQLVSHRSTALPNGTQRYQLGFRFLTLPGSAENT
LQRLITQLEMKRRSLVR

Specific function: Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Increasing levels of c-di-GMP lead to decreased motility [H]

COG id: COG5581

COG function: function code M; Predicted glycosyltransferase

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PilZ domain [H]

Homologues:

Organism=Escherichia coli, GI1787443, Length=231, Percent_Identity=34.1991341991342, Blast_Score=134, Evalue=7e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009875
- InterPro:   IPR009926 [H]

Pfam domain/function: PF07238 PilZ; PF07317 YcgR [H]

EC number: NA

Molecular weight: Translated: 28845; Mature: 28845

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTNQSNGQTDTPGQPHAPTDESGNDFGRRNPLEIGVQLRNLVNRGDFLTVQYAGGQLVT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHH
RLLDVDVRGRTFTFDWGALSHQNKGLLSAPRCQFHAQPDGVRVEFATSTPRETRFEGLPA
HHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCHHHCCCCCC
FEADFPEVLFYVQRREYFRVDAPILDPYMCTGLLPEGDTFRFEVHDLSLGGVGMRTTDER
CCCCHHHHHHHHHHHHEEEECCCCCCHHHHHCCCCCCCEEEEEEEEEEECCCCCCCCHHH
VAELPMGTRLMDCELALGALGRLSLDLQLVSHRSTALPNGTQRYQLGFRFLTLPGSAENT
HHHCCCCCEEEEHHHHHCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEECCCCHHHH
LQRLITQLEMKRRSLVR
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDTNQSNGQTDTPGQPHAPTDESGNDFGRRNPLEIGVQLRNLVNRGDFLTVQYAGGQLVT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHH
RLLDVDVRGRTFTFDWGALSHQNKGLLSAPRCQFHAQPDGVRVEFATSTPRETRFEGLPA
HHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCHHHCCCCCC
FEADFPEVLFYVQRREYFRVDAPILDPYMCTGLLPEGDTFRFEVHDLSLGGVGMRTTDER
CCCCHHHHHHHHHHHHEEEECCCCCCHHHHHCCCCCCCEEEEEEEEEEECCCCCCCCHHH
VAELPMGTRLMDCELALGALGRLSLDLQLVSHRSTALPNGTQRYQLGFRFLTLPGSAENT
HHHCCCCCEEEEHHHHHCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEECCCCHHHH
LQRLITQLEMKRRSLVR
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA