| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is ccsB [H]
Identifier: 91785432
GI number: 91785432
Start: 4492236
End: 4494458
Strand: Reverse
Name: ccsB [H]
Synonym: Bxe_A0347
Alternate gene names: 91785432
Gene position: 4494458-4492236 (Counterclockwise)
Preceding gene: 91785433
Following gene: 91785431
Centisome position: 91.8
GC content: 62.53
Gene sequence:
>2223_bases ATGAGCGTCACCACGTCGGGTTTGCAGTCGAAGTCGGGCAATCGCATTACGCGCAGCGTCATCGAAGTCTTGAGTTCGAT GCGTTTTGCCATTTCGTTGCTCGTGATTCTGTCGATCGCCAGCATCATCGGCACCGTCCTTACGCAGGACGATCCGTACC CCAACTACGTCAATCAGTTTGGCCCGTTCTGGGCGGACATCTTCCGCTCGCTCAGCCTGTACACGGTGTACAGCTCGTGG TGGTTCATGCTGATCCTCGGCTTCCTGATGGTGTCGGTGTCGCTCTGCGTGATCCGTAATGCGCCGAAAATGGTCGCCGA CGCGAAGAGCTGGAAAGACAAGGTCCGCGAAGGCAGCCTGCGCGCGTTCCATCACAAAGGCGAGTTCGCGGTGCAGGGCA CGCGCGCGCAGACCTCGGCCGTGCTCGCCAGACTCTCGGCCAGGCTCGGCTACAAGTTCGTCACACGTGAGTCCGACGGC GCGACCTTGATCGCCGCCAAACGCGGCGCGCTGACCAGGTTCGGCTACATTTCGGCTCACCTGGCGATCGTGGTGATCTG CCTCGGCGGTCTGCTCGACAGCAATCTGCCGATCAAGCTGCAAATGTGGCTGTTCGACAAGTCGCCGATCCGCGCCAACA CGGTGATCAATGACATTCCGCCGGAACATCGTCTGTCGCAATCGAACCCGACGTTCCGCGGCTACGCGTGGGTGCCGGAA GGGCAGCACGTTTCCACGGCGATCCTGAACCAGCCGGACGGCTCGCTGATCCAGGACCTGCCGTTTTCGATCGAGCTGAA CAAGTTCATCGTCGATTACTACTCGACGGGCATGCCGAAGCTGTTCGCGAGCGACATCGTCGTGGTGGATCACAAGACCG GCGCGCGCGTGCCGGCTCGCGTCGAAGTGAACAAGCCGTTCACTTACGACGGCGTGTCGATCTATCAATCGAGCTTCCAG GACGGCGGCTCGCAAATGCAGATGACGGCCTACCCGATGAGCGGCGCCAGCGCGAAGACCGCGCCGTTCGGCGGCACGAT CGGCGGCAATGCGCCGTTGAGCTCGGCCACGCCGCTTGCCGATGGCCAGACGGTGGAATTCACCGATTTCCGCGCGATCA ACGTCGAAAACATCCAGAACGGCAGCGGCCAGACCGACGCCCGCGGCGTCGCGGCGCACCGCACGCTGAAAGAAGCGTTC GACGAGCGCCTCGGCTCCGGCGCGAAAACCTCGAAGCCGCTCGATCTGCACAACGTCGGCCCGTCGGTGCAATACAAGGT GCGCGACAAGGACGGCCAGGCGCGCGAATACAACAATTACATGCTGCCGGTCGACGTGTCCGGCGAAAAGATGTTCCTCG CCGGCATGCGCATGAATCCGGACGATCCGTTCCGCTACCTGCGCATTCCGGCCGACAGCGGCGGCACGGTCAAGGAGTGG ATGAATCTGCGCGCCACGCTCGAGGATCCGGCCATGCGCGCCTCGGCCGCTCACCGTTTCGCGCTGCGCTCGGTGCCCGG CGCGAATGCCGAACTGCAACAGCATCTCGAAGAAAGCGCGCTGCGCGTGCTGACCCTTTTTGCGGGCGCGGATAACGGGA TCAAGATGCCGAACGGCCAGGCGGTCGGCGGCTTCCAGGCCATCGCCGGTTTTATCGACCATTCGGTGCCGAAGGGCGAA CAGGAAAAGGCCGCCGGCCTGCTGCTGCGCATGCTCGAAGGCTCCACGTGGGATCTATACCAACTGTCCCGCCAGCAGCT CGGCGAGCCCGAGGCAACGCCCAATGCGGACGCCAGCCGCTTCATCCAGAGCTCGATCAATGCGATATCCGACAGCTTTC TGTATGGATCGCCGGTCTACCTGCAACTCGACTCCTTCAAGCAGGTGCAAGCCTCGGTATTTCAGCTGACGCGCGCGCCG GGCAAAAAAGTCGTGTATCTTGGCAGCCTGCTCCTCGTGTTAGGCATCTTTTCGATGTTCTACGTCCGCGAACGGCGCCT CTGGTTCTGGCTTAAAGATACCGACCACGGCACAAATGTCGTGATGGCGATGTCGAGCGCGCGTAAAACGCTCGACTTCG AGAAAGAGTTCGTCCAGACACGCGACGCCGTGGGCGCCGCGCTGGGCGCCAAACTGGCTGAAGCATCCGACGCCGCCAGC GCCTCCGCCAAATCCGGCAACGCCGGCGCGCCGTCCGCAAGCTCACACGATTCGACCCGGTAA
Upstream 100 bases:
>100_bases TGCAACCGGTCCGGCGAGGCCGGTACAAAACAAGAAAAGGGTGGGGGCGTCGTGCCTGCGACAGCCCTTCACCCTTTTTT GCTGTTCAGTCGGAGCATGA
Downstream 100 bases:
>100_bases GATCATGGACTTGACTCAGGTTTCCTCATCCTCTTCTTCACCCTCGCGGCCCAGGAAAGCGCCCGCCGGTGAAGTGCCCA ACGTCGCGCAGTACGACGAG
Product: cytochrome C biogenesis protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 740; Mature: 739
Protein sequence:
>740_residues MSVTTSGLQSKSGNRITRSVIEVLSSMRFAISLLVILSIASIIGTVLTQDDPYPNYVNQFGPFWADIFRSLSLYTVYSSW WFMLILGFLMVSVSLCVIRNAPKMVADAKSWKDKVREGSLRAFHHKGEFAVQGTRAQTSAVLARLSARLGYKFVTRESDG ATLIAAKRGALTRFGYISAHLAIVVICLGGLLDSNLPIKLQMWLFDKSPIRANTVINDIPPEHRLSQSNPTFRGYAWVPE GQHVSTAILNQPDGSLIQDLPFSIELNKFIVDYYSTGMPKLFASDIVVVDHKTGARVPARVEVNKPFTYDGVSIYQSSFQ DGGSQMQMTAYPMSGASAKTAPFGGTIGGNAPLSSATPLADGQTVEFTDFRAINVENIQNGSGQTDARGVAAHRTLKEAF DERLGSGAKTSKPLDLHNVGPSVQYKVRDKDGQAREYNNYMLPVDVSGEKMFLAGMRMNPDDPFRYLRIPADSGGTVKEW MNLRATLEDPAMRASAAHRFALRSVPGANAELQQHLEESALRVLTLFAGADNGIKMPNGQAVGGFQAIAGFIDHSVPKGE QEKAAGLLLRMLEGSTWDLYQLSRQQLGEPEATPNADASRFIQSSINAISDSFLYGSPVYLQLDSFKQVQASVFQLTRAP GKKVVYLGSLLLVLGIFSMFYVRERRLWFWLKDTDHGTNVVMAMSSARKTLDFEKEFVQTRDAVGAALGAKLAEASDAAS ASAKSGNAGAPSASSHDSTR
Sequences:
>Translated_740_residues MSVTTSGLQSKSGNRITRSVIEVLSSMRFAISLLVILSIASIIGTVLTQDDPYPNYVNQFGPFWADIFRSLSLYTVYSSW WFMLILGFLMVSVSLCVIRNAPKMVADAKSWKDKVREGSLRAFHHKGEFAVQGTRAQTSAVLARLSARLGYKFVTRESDG ATLIAAKRGALTRFGYISAHLAIVVICLGGLLDSNLPIKLQMWLFDKSPIRANTVINDIPPEHRLSQSNPTFRGYAWVPE GQHVSTAILNQPDGSLIQDLPFSIELNKFIVDYYSTGMPKLFASDIVVVDHKTGARVPARVEVNKPFTYDGVSIYQSSFQ DGGSQMQMTAYPMSGASAKTAPFGGTIGGNAPLSSATPLADGQTVEFTDFRAINVENIQNGSGQTDARGVAAHRTLKEAF DERLGSGAKTSKPLDLHNVGPSVQYKVRDKDGQAREYNNYMLPVDVSGEKMFLAGMRMNPDDPFRYLRIPADSGGTVKEW MNLRATLEDPAMRASAAHRFALRSVPGANAELQQHLEESALRVLTLFAGADNGIKMPNGQAVGGFQAIAGFIDHSVPKGE QEKAAGLLLRMLEGSTWDLYQLSRQQLGEPEATPNADASRFIQSSINAISDSFLYGSPVYLQLDSFKQVQASVFQLTRAP GKKVVYLGSLLLVLGIFSMFYVRERRLWFWLKDTDHGTNVVMAMSSARKTLDFEKEFVQTRDAVGAALGAKLAEASDAAS ASAKSGNAGAPSASSHDSTR >Mature_739_residues SVTTSGLQSKSGNRITRSVIEVLSSMRFAISLLVILSIASIIGTVLTQDDPYPNYVNQFGPFWADIFRSLSLYTVYSSWW FMLILGFLMVSVSLCVIRNAPKMVADAKSWKDKVREGSLRAFHHKGEFAVQGTRAQTSAVLARLSARLGYKFVTRESDGA TLIAAKRGALTRFGYISAHLAIVVICLGGLLDSNLPIKLQMWLFDKSPIRANTVINDIPPEHRLSQSNPTFRGYAWVPEG QHVSTAILNQPDGSLIQDLPFSIELNKFIVDYYSTGMPKLFASDIVVVDHKTGARVPARVEVNKPFTYDGVSIYQSSFQD GGSQMQMTAYPMSGASAKTAPFGGTIGGNAPLSSATPLADGQTVEFTDFRAINVENIQNGSGQTDARGVAAHRTLKEAFD ERLGSGAKTSKPLDLHNVGPSVQYKVRDKDGQAREYNNYMLPVDVSGEKMFLAGMRMNPDDPFRYLRIPADSGGTVKEWM NLRATLEDPAMRASAAHRFALRSVPGANAELQQHLEESALRVLTLFAGADNGIKMPNGQAVGGFQAIAGFIDHSVPKGEQ EKAAGLLLRMLEGSTWDLYQLSRQQLGEPEATPNADASRFIQSSINAISDSFLYGSPVYLQLDSFKQVQASVFQLTRAPG KKVVYLGSLLLVLGIFSMFYVRERRLWFWLKDTDHGTNVVMAMSSARKTLDFEKEFVQTRDAVGAALGAKLAEASDAASA SAKSGNAGAPSASSHDSTR
Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]
COG id: COG1333
COG function: function code O; ResB protein required for cytochrome c biosynthesis
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ccs1/ccsB family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007816 [H]
Pfam domain/function: PF05140 ResB [H]
EC number: NA
Molecular weight: Translated: 80656; Mature: 80524
Theoretical pI: Translated: 9.36; Mature: 9.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVTTSGLQSKSGNRITRSVIEVLSSMRFAISLLVILSIASIIGTVLTQDDPYPNYVNQF CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHC GPFWADIFRSLSLYTVYSSWWFMLILGFLMVSVSLCVIRNAPKMVADAKSWKDKVREGSL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC RAFHHKGEFAVQGTRAQTSAVLARLSARLGYKFVTRESDGATLIAAKRGALTRFGYISAH EEEECCCCEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCEEEEECCCCHHHHHHHHHH LAIVVICLGGLLDSNLPIKLQMWLFDKSPIRANTVINDIPPEHRLSQSNPTFRGYAWVPE HHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEECCCCCHHHCCCCCCCCEEEEECCC GQHVSTAILNQPDGSLIQDLPFSIELNKFIVDYYSTGMPKLFASDIVVVDHKTGARVPAR CCCCEEHEECCCCCCHHHCCCCEEEHHHHHHHHHHCCCCHHHHCCEEEEECCCCCCCCEE VEVNKPFTYDGVSIYQSSFQDGGSQMQMTAYPMSGASAKTAPFGGTIGGNAPLSSATPLA EECCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC DGQTVEFTDFRAINVENIQNGSGQTDARGVAAHRTLKEAFDERLGSGAKTSKPLDLHNVG CCCEEEECCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC PSVQYKVRDKDGQAREYNNYMLPVDVSGEKMFLAGMRMNPDDPFRYLRIPADSGGTVKEW CCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCCCCHHHH MNLRATLEDPAMRASAAHRFALRSVPGANAELQQHLEESALRVLTLFAGADNGIKMPNGQ HHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCC AVGGFQAIAGFIDHSVPKGEQEKAAGLLLRMLEGSTWDLYQLSRQQLGEPEATPNADASR CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCHHHH FIQSSINAISDSFLYGSPVYLQLDSFKQVQASVFQLTRAPGKKVVYLGSLLLVLGIFSMF HHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH YVRERRLWFWLKDTDHGTNVVMAMSSARKTLDFEKEFVQTRDAVGAALGAKLAEASDAAS HHHHCEEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHC ASAKSGNAGAPSASSHDSTR CCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SVTTSGLQSKSGNRITRSVIEVLSSMRFAISLLVILSIASIIGTVLTQDDPYPNYVNQF CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHC GPFWADIFRSLSLYTVYSSWWFMLILGFLMVSVSLCVIRNAPKMVADAKSWKDKVREGSL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC RAFHHKGEFAVQGTRAQTSAVLARLSARLGYKFVTRESDGATLIAAKRGALTRFGYISAH EEEECCCCEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCEEEEECCCCHHHHHHHHHH LAIVVICLGGLLDSNLPIKLQMWLFDKSPIRANTVINDIPPEHRLSQSNPTFRGYAWVPE HHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEECCCCCHHHCCCCCCCCEEEEECCC GQHVSTAILNQPDGSLIQDLPFSIELNKFIVDYYSTGMPKLFASDIVVVDHKTGARVPAR CCCCEEHEECCCCCCHHHCCCCEEEHHHHHHHHHHCCCCHHHHCCEEEEECCCCCCCCEE VEVNKPFTYDGVSIYQSSFQDGGSQMQMTAYPMSGASAKTAPFGGTIGGNAPLSSATPLA EECCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC DGQTVEFTDFRAINVENIQNGSGQTDARGVAAHRTLKEAFDERLGSGAKTSKPLDLHNVG CCCEEEECCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC PSVQYKVRDKDGQAREYNNYMLPVDVSGEKMFLAGMRMNPDDPFRYLRIPADSGGTVKEW CCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCCCCHHHH MNLRATLEDPAMRASAAHRFALRSVPGANAELQQHLEESALRVLTLFAGADNGIKMPNGQ HHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCC AVGGFQAIAGFIDHSVPKGEQEKAAGLLLRMLEGSTWDLYQLSRQQLGEPEATPNADASR CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCHHHH FIQSSINAISDSFLYGSPVYLQLDSFKQVQASVFQLTRAPGKKVVYLGSLLLVLGIFSMF HHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH YVRERRLWFWLKDTDHGTNVVMAMSSARKTLDFEKEFVQTRDAVGAALGAKLAEASDAAS HHHHCEEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHC ASAKSGNAGAPSASSHDSTR CCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 14621292 [H]