| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is yegD [H]
Identifier: 91785350
GI number: 91785350
Start: 4411178
End: 4412428
Strand: Reverse
Name: yegD [H]
Synonym: Bxe_A0429
Alternate gene names: 91785350
Gene position: 4412428-4411178 (Counterclockwise)
Preceding gene: 91785352
Following gene: 91785348
Centisome position: 90.13
GC content: 65.55
Gene sequence:
>1251_bases ATGAACTATTGCGCGATTGACTTCGGTACTTCCAACTCGGCCGTGGCCGTTCCTGACGGCGGCGCGCTCAGGCTCGCGCC GGTCGAGGGCGCCTATACCACGCTGCCCACCTCGGTCTTTTTCAATACCGACGAGGACACCCGCGAATTCGGGCGGGCGG CGCTCGCCGCGTACATTGACGGCTTCGACGGCCGCCTGATGCGTTCCATGAAGAGCATTCTCGGCTCGCCGCTCGCGGAG AACTCCACGGATCTGGGCGACGGTTCCGCGATCAGGTACACCGACGTGATCGCGATTTTCATCGATCACCTCAAGCGCTC GGCCGAACAAAGCGTCGGCGGCCCGATTCATCGCGCCGTGCTGGGCCGCCCGGTGTTTTTCGTCGACGACGACCCGCGTG CCGATCAGATGGCGCAGCGGCAACTCGAAGCCGCCGCACGCTCGGTCGGTCTGCAGGAGATTCACTTTCAGTATGAGCCG ATCGCGGCCGCGTTCGACTACGAGTCGCATCTGGCGGAAGAAGGGCTCGTGCTGGTGGCCGACATCGGCGGCGGTACCTC GGACTTCTCGCTGGTGCGGGTCGGGCCCGAGCGGATGAAGCGCGTCGAGCGCAAGGACGACGTGCTGGCCCACCACGGCG TGCACGTCGCCGGTACGGATTTCGACCGCCGCGTGGAACTGGCGACGATCCTGCGTGAACTCGGCTATCAGACGCTGGAC CCGGAAGGCCGCGAGATCCCGAACCGGGTCTACTTCGATCTCGCGACCTGGCATCTGATCAACACCGTCTACTCCCCGAA GCGGGTCAGCGAACTCGCGCTGATGCGCCATCTGTTCACGGAGGTCAAGCATCACGACCGCCTGATGCGCGTCGTGGACC GGCGCCTCGGCCATGCGCTGGCCGCGCATGCGGAAGAGGCGAAGATCGGCGTGGCGGCGGGTGGAGAGACCGTGATCGAT CTCGACGAAGTGGAAGACGACCTGCGCCTCGCGTTCGACGAAGCACAACTCATCAAGGCCGGCCACGACGAAACGCTGCG CATCGTGCAGGCGGCGCGCGATACGGTGCAGGCGGCCGGGGTCGCGACACGCGACGTCGACGCCATCTATTTCACCGGCG GCTCGACGGGTCTGGCGTTTCTATCGGGCGCATTGGCGGCGGCATTTCCCGATGCCAGGGCGGTATTCGGCGACCGTCTC GCGAGTGTGGCGACGGGACTCGGTATTCACGCGCGGCGTGTGTTTGGATAA
Upstream 100 bases:
>100_bases TCGCGACTGAGTTGAAAACGTCAGTTGATGCTGATCGGTCTTTCGTGTTACAAAGCCGCTCCCCTTCTGTCCGCGCCAGC CGTGAGCGGCGATTCCTGCC
Downstream 100 bases:
>100_bases CCGGACATTATCGGTCGCATATTGCGAAGATAATCCCTGTTCTAGTTGAAGCAGATATAAAAAAACCCCGCCGAGGCGGG GTTTTTTTGCGTCCTGAAGG
Product: putative chaperone
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 416; Mature: 416
Protein sequence:
>416_residues MNYCAIDFGTSNSAVAVPDGGALRLAPVEGAYTTLPTSVFFNTDEDTREFGRAALAAYIDGFDGRLMRSMKSILGSPLAE NSTDLGDGSAIRYTDVIAIFIDHLKRSAEQSVGGPIHRAVLGRPVFFVDDDPRADQMAQRQLEAAARSVGLQEIHFQYEP IAAAFDYESHLAEEGLVLVADIGGGTSDFSLVRVGPERMKRVERKDDVLAHHGVHVAGTDFDRRVELATILRELGYQTLD PEGREIPNRVYFDLATWHLINTVYSPKRVSELALMRHLFTEVKHHDRLMRVVDRRLGHALAAHAEEAKIGVAAGGETVID LDEVEDDLRLAFDEAQLIKAGHDETLRIVQAARDTVQAAGVATRDVDAIYFTGGSTGLAFLSGALAAAFPDARAVFGDRL ASVATGLGIHARRVFG
Sequences:
>Translated_416_residues MNYCAIDFGTSNSAVAVPDGGALRLAPVEGAYTTLPTSVFFNTDEDTREFGRAALAAYIDGFDGRLMRSMKSILGSPLAE NSTDLGDGSAIRYTDVIAIFIDHLKRSAEQSVGGPIHRAVLGRPVFFVDDDPRADQMAQRQLEAAARSVGLQEIHFQYEP IAAAFDYESHLAEEGLVLVADIGGGTSDFSLVRVGPERMKRVERKDDVLAHHGVHVAGTDFDRRVELATILRELGYQTLD PEGREIPNRVYFDLATWHLINTVYSPKRVSELALMRHLFTEVKHHDRLMRVVDRRLGHALAAHAEEAKIGVAAGGETVID LDEVEDDLRLAFDEAQLIKAGHDETLRIVQAARDTVQAAGVATRDVDAIYFTGGSTGLAFLSGALAAAFPDARAVFGDRL ASVATGLGIHARRVFG >Mature_416_residues MNYCAIDFGTSNSAVAVPDGGALRLAPVEGAYTTLPTSVFFNTDEDTREFGRAALAAYIDGFDGRLMRSMKSILGSPLAE NSTDLGDGSAIRYTDVIAIFIDHLKRSAEQSVGGPIHRAVLGRPVFFVDDDPRADQMAQRQLEAAARSVGLQEIHFQYEP IAAAFDYESHLAEEGLVLVADIGGGTSDFSLVRVGPERMKRVERKDDVLAHHGVHVAGTDFDRRVELATILRELGYQTLD PEGREIPNRVYFDLATWHLINTVYSPKRVSELALMRHLFTEVKHHDRLMRVVDRRLGHALAAHAEEAKIGVAAGGETVID LDEVEDDLRLAFDEAQLIKAGHDETLRIVQAARDTVQAAGVATRDVDAIYFTGGSTGLAFLSGALAAAFPDARAVFGDRL ASVATGLGIHARRVFG
Specific function: Unknown
COG id: COG0443
COG function: function code O; Molecular chaperone
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the heat shock protein 70 family [H]
Homologues:
Organism=Escherichia coli, GI87082035, Length=464, Percent_Identity=29.3103448275862, Blast_Score=163, Evalue=2e-41, Organism=Escherichia coli, GI1786196, Length=421, Percent_Identity=24.4655581947743, Blast_Score=73, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6322505, Length=399, Percent_Identity=23.3082706766917, Blast_Score=65, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018181 - InterPro: IPR001023 - InterPro: IPR013126 [H]
Pfam domain/function: PF00012 HSP70 [H]
EC number: NA
Molecular weight: Translated: 45195; Mature: 45195
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: PS00639 THIOL_PROTEASE_HIS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNYCAIDFGTSNSAVAVPDGGALRLAPVEGAYTTLPTSVFFNTDEDTREFGRAALAAYID CCEEEEEECCCCCEEECCCCCEEEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHC GFDGRLMRSMKSILGSPLAENSTDLGDGSAIRYTDVIAIFIDHLKRSAEQSVGGPIHRAV CCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHH LGRPVFFVDDDPRADQMAQRQLEAAARSVGLQEIHFQYEPIAAAFDYESHLAEEGLVLVA HCCCEEEECCCCCHHHHHHHHHHHHHHHCCHHHHEEEECCHHHCCCHHHHHCCCCEEEEE DIGGGTSDFSLVRVGPERMKRVERKDDVLAHHGVHVAGTDFDRRVELATILRELGYQTLD ECCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHCCCCCCC PEGREIPNRVYFDLATWHLINTVYSPKRVSELALMRHLFTEVKHHDRLMRVVDRRLGHAL CCCCCCCCCEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAHAEEAKIGVAAGGETVIDLDEVEDDLRLAFDEAQLIKAGHDETLRIVQAARDTVQAAG HHCCHHCCEEEECCCCEEEEHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC VATRDVDAIYFTGGSTGLAFLSGALAAAFPDARAVFGDRLASVATGLGIHARRVFG CEECCCCEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHCC >Mature Secondary Structure MNYCAIDFGTSNSAVAVPDGGALRLAPVEGAYTTLPTSVFFNTDEDTREFGRAALAAYID CCEEEEEECCCCCEEECCCCCEEEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHC GFDGRLMRSMKSILGSPLAENSTDLGDGSAIRYTDVIAIFIDHLKRSAEQSVGGPIHRAV CCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHH LGRPVFFVDDDPRADQMAQRQLEAAARSVGLQEIHFQYEPIAAAFDYESHLAEEGLVLVA HCCCEEEECCCCCHHHHHHHHHHHHHHHCCHHHHEEEECCHHHCCCHHHHHCCCCEEEEE DIGGGTSDFSLVRVGPERMKRVERKDDVLAHHGVHVAGTDFDRRVELATILRELGYQTLD ECCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHCCCCCCC PEGREIPNRVYFDLATWHLINTVYSPKRVSELALMRHLFTEVKHHDRLMRVVDRRLGHAL CCCCCCCCCEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAHAEEAKIGVAAGGETVIDLDEVEDDLRLAFDEAQLIKAGHDETLRIVQAARDTVQAAG HHCCHHCCEEEECCCCEEEEHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC VATRDVDAIYFTGGSTGLAFLSGALAAAFPDARAVFGDRLASVATGLGIHARRVFG CEECCCCEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503; 6094528; 7940673; 7984428 [H]