| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is ybeC [H]
Identifier: 91785348
GI number: 91785348
Start: 4408786
End: 4410339
Strand: Reverse
Name: ybeC [H]
Synonym: Bxe_A0431
Alternate gene names: 91785348
Gene position: 4410339-4408786 (Counterclockwise)
Preceding gene: 91785350
Following gene: 91785340
Centisome position: 90.08
GC content: 59.52
Gene sequence:
>1554_bases ATGCTCACCGGCTTGGGCTCGATCATCGGATCGGGCTGGCTGTTCGGCGCCTGGAAGGCTGCAAAAATTGCCGGGCCCGC TGCCATTTGTGCGTGGGTGATCGGCGCGGTCGTGATTCTCGCGATCGCATTGACCTACGCAGAACTCGGCGCGATGTTCC CGGAATCCGGCGGCATGGTGCGTTACGCGCGCTATTCGCACGGTGCGCTGGTTGGATTCATCAGCGCATGGGCTAACTGG ATTGCGATTGTTTCAGTTATTCCCATCGAGGCTGAAGCATCCATTCAATATATGAGTACATGGCCCTATCCCTGGGCGCA TGCGTTATTCGTGGACGGATCATTAACCACCCACGGGTTATTACTGTCCGCGGCACTCGTGATCATTTACTTCCTGCTGA ACTATTGGGGCGTGAAACTGTTCGCGCGCGCCAATTCGGCAATCACGATCTTCAAGTTTCTGATTCCGGGCGCGACCATC CTCGGCCTGATGCTGACGGGCTTCCACAAGGAAAATTTCGGCGAAGTGAGTACCTTCGCGCCGTACGGCTGGTCGGCGGT GCTGACCGCCGTGGCGACGAGCGGCATTGTGTTCGCGTTCAACGGTTTCCAGAGCCCGATCAACCTTGCCGGTGAAGCGC GCAATCCGGCCAGAAGCGTGCCGTTCGCGGTGATCGGCTCGATCCTGCTGGCGCTGGTGATCTATGTTCTGTTGCAGATC GCGTATATCGGCGCGGTGAACCCGAGCGACGTGATGAAGGGCTGGAGCCACTTCAACTTTGCTTCGCCGTTTGCGGAACT GGCGATCGCGCTAAACCTGAACTGGCTGGCGATCCTGCTCTATGTCGACGCGTTCGTCAGCCCGAGCGGCACGGGTACGA CCTACATGGCGACCACCAGCCGCATGATCTACGCGATGGAGCGCAACAACACCATGCCGAAGATGTTCGGCAACGTGCAC CCGTTCTACGGCGTGCCGCGCCCGGCAATGTGGTTCAACCTGCTGGTGTCGTTCATTTTCCTGTTCTTCTTCCGCGGCTG GAGTTCGCTCGCGGCGGTGATTTCCGTCGCCACCGTGATCTCATACCTGACCGGCCCGATCAGCCTGATGTCGCTGCGCC GTGCGGCAACGGACCTCGAGCGTCCCTTGCATATTCCGGGCATGAAGATCATTGCCCCGTTCGCGTTCGTCTGCGCGTCG CTGATCCTGTACTGGGCGAAGTGGCCGCTGACCGGCGAGATCATTCTGCTGATGGTCGTCGCGTTGCCGGTGTACTTCTA CTTTCAGGCGAAGTCGGGTTTTGCCGGCTGGGGCCGTGATCTGAAGGCGGCATGGTGGCTGGTCGCCTATCTGCCGGTGA TGGCGATTCTGTCGCTGATCGGCAGCAAGCAGTTCGGCGGTCACGACCTCATCCCTTACGGCTGGGACATGCTGGTGGTC ATCGCGTTTTCGCTGGTGTTCTACTACTGGGGCGTGAATAGCGGCTATCGGTCGGAATATCTGGACGAGCGCCAGGAGCA CGATGAAGTGCTCGAAGGCATTGGTGCGCACTAG
Upstream 100 bases:
>100_bases CTTGCATGGGGCCGGGCTGGGTGCTGAAACACCGGCTCCGGCCGACACAGGAGAAGACGTGAAAAGTTCTATACAACGGA ACATCGGGCCATTCGCGCTG
Downstream 100 bases:
>100_bases GCTGCCGCACTGAGTCTGCTGGCTGGATCGTAGTCGGATCCGCTGCAAAAACCCCCGCCTGAAGCAATTCAGGCGGGGGT TTTTATTTGCAGCCGTGCTT
Product: amino acid transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 517; Mature: 517
Protein sequence:
>517_residues MLTGLGSIIGSGWLFGAWKAAKIAGPAAICAWVIGAVVILAIALTYAELGAMFPESGGMVRYARYSHGALVGFISAWANW IAIVSVIPIEAEASIQYMSTWPYPWAHALFVDGSLTTHGLLLSAALVIIYFLLNYWGVKLFARANSAITIFKFLIPGATI LGLMLTGFHKENFGEVSTFAPYGWSAVLTAVATSGIVFAFNGFQSPINLAGEARNPARSVPFAVIGSILLALVIYVLLQI AYIGAVNPSDVMKGWSHFNFASPFAELAIALNLNWLAILLYVDAFVSPSGTGTTYMATTSRMIYAMERNNTMPKMFGNVH PFYGVPRPAMWFNLLVSFIFLFFFRGWSSLAAVISVATVISYLTGPISLMSLRRAATDLERPLHIPGMKIIAPFAFVCAS LILYWAKWPLTGEIILLMVVALPVYFYFQAKSGFAGWGRDLKAAWWLVAYLPVMAILSLIGSKQFGGHDLIPYGWDMLVV IAFSLVFYYWGVNSGYRSEYLDERQEHDEVLEGIGAH
Sequences:
>Translated_517_residues MLTGLGSIIGSGWLFGAWKAAKIAGPAAICAWVIGAVVILAIALTYAELGAMFPESGGMVRYARYSHGALVGFISAWANW IAIVSVIPIEAEASIQYMSTWPYPWAHALFVDGSLTTHGLLLSAALVIIYFLLNYWGVKLFARANSAITIFKFLIPGATI LGLMLTGFHKENFGEVSTFAPYGWSAVLTAVATSGIVFAFNGFQSPINLAGEARNPARSVPFAVIGSILLALVIYVLLQI AYIGAVNPSDVMKGWSHFNFASPFAELAIALNLNWLAILLYVDAFVSPSGTGTTYMATTSRMIYAMERNNTMPKMFGNVH PFYGVPRPAMWFNLLVSFIFLFFFRGWSSLAAVISVATVISYLTGPISLMSLRRAATDLERPLHIPGMKIIAPFAFVCAS LILYWAKWPLTGEIILLMVVALPVYFYFQAKSGFAGWGRDLKAAWWLVAYLPVMAILSLIGSKQFGGHDLIPYGWDMLVV IAFSLVFYYWGVNSGYRSEYLDERQEHDEVLEGIGAH >Mature_517_residues MLTGLGSIIGSGWLFGAWKAAKIAGPAAICAWVIGAVVILAIALTYAELGAMFPESGGMVRYARYSHGALVGFISAWANW IAIVSVIPIEAEASIQYMSTWPYPWAHALFVDGSLTTHGLLLSAALVIIYFLLNYWGVKLFARANSAITIFKFLIPGATI LGLMLTGFHKENFGEVSTFAPYGWSAVLTAVATSGIVFAFNGFQSPINLAGEARNPARSVPFAVIGSILLALVIYVLLQI AYIGAVNPSDVMKGWSHFNFASPFAELAIALNLNWLAILLYVDAFVSPSGTGTTYMATTSRMIYAMERNNTMPKMFGNVH PFYGVPRPAMWFNLLVSFIFLFFFRGWSSLAAVISVATVISYLTGPISLMSLRRAATDLERPLHIPGMKIIAPFAFVCAS LILYWAKWPLTGEIILLMVVALPVYFYFQAKSGFAGWGRDLKAAWWLVAYLPVMAILSLIGSKQFGGHDLIPYGWDMLVV IAFSLVFYYWGVNSGYRSEYLDERQEHDEVLEGIGAH
Specific function: Uptake of an yet unknown amino-acid with the concomitant import of a proton [H]
COG id: COG0531
COG function: function code E; Amino acid transporters
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily. AGT (TC 2.A.3.11) family [H]
Homologues:
Organism=Homo sapiens, GI115648063, Length=344, Percent_Identity=24.7093023255814, Blast_Score=78, Evalue=3e-14, Organism=Homo sapiens, GI115648022, Length=344, Percent_Identity=24.7093023255814, Blast_Score=78, Evalue=3e-14, Organism=Homo sapiens, GI4507047, Length=400, Percent_Identity=24.5, Blast_Score=76, Evalue=7e-14, Organism=Homo sapiens, GI33286428, Length=443, Percent_Identity=24.6049661399549, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI71979932, Length=443, Percent_Identity=24.3792325056433, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI187423910, Length=390, Percent_Identity=24.3589743589744, Blast_Score=73, Evalue=8e-13, Organism=Homo sapiens, GI7657591, Length=390, Percent_Identity=24.3589743589744, Blast_Score=73, Evalue=8e-13, Organism=Homo sapiens, GI186910308, Length=350, Percent_Identity=24.8571428571429, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI186910306, Length=350, Percent_Identity=24.8571428571429, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI186910304, Length=350, Percent_Identity=24.8571428571429, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI181337167, Length=341, Percent_Identity=24.0469208211144, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI7657683, Length=411, Percent_Identity=23.8442822384428, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI110347453, Length=339, Percent_Identity=26.2536873156342, Blast_Score=66, Evalue=9e-11, Organism=Escherichia coli, GI87082250, Length=446, Percent_Identity=25.7847533632287, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI1786789, Length=447, Percent_Identity=24.1610738255034, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1786302, Length=395, Percent_Identity=24.3037974683544, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI1789017, Length=332, Percent_Identity=24.3975903614458, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI87081869, Length=305, Percent_Identity=25.2459016393443, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1786602, Length=356, Percent_Identity=25, Blast_Score=66, Evalue=5e-12, Organism=Escherichia coli, GI1790653, Length=347, Percent_Identity=23.6311239193084, Blast_Score=66, Evalue=7e-12, Organism=Escherichia coli, GI2367353, Length=276, Percent_Identity=28.2608695652174, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI87081915, Length=352, Percent_Identity=26.4204545454545, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1788480, Length=353, Percent_Identity=24.0793201133144, Blast_Score=63, Evalue=4e-11, Organism=Escherichia coli, GI48994972, Length=338, Percent_Identity=26.3313609467456, Blast_Score=63, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17540018, Length=437, Percent_Identity=24.9427917620137, Blast_Score=82, Evalue=6e-16, Organism=Caenorhabditis elegans, GI32566699, Length=324, Percent_Identity=25.9259259259259, Blast_Score=78, Evalue=9e-15, Organism=Drosophila melanogaster, GI24651635, Length=437, Percent_Identity=25.4004576659039, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24651633, Length=437, Percent_Identity=25.4004576659039, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24667468, Length=403, Percent_Identity=26.0545905707196, Blast_Score=89, Evalue=6e-18, Organism=Drosophila melanogaster, GI21357367, Length=438, Percent_Identity=24.6575342465753, Blast_Score=81, Evalue=2e-15, Organism=Drosophila melanogaster, GI45550968, Length=415, Percent_Identity=24.0963855421687, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI19921172, Length=415, Percent_Identity=24.0963855421687, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24666159, Length=403, Percent_Identity=22.3325062034739, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI221512776, Length=403, Percent_Identity=22.8287841191067, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI221331183, Length=442, Percent_Identity=23.3031674208145, Blast_Score=66, Evalue=5e-11, Organism=Drosophila melanogaster, GI17647653, Length=442, Percent_Identity=23.3031674208145, Blast_Score=66, Evalue=5e-11, Organism=Drosophila melanogaster, GI24664379, Length=442, Percent_Identity=23.3031674208145, Blast_Score=66, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004841 - InterPro: IPR002293 [H]
Pfam domain/function: PF00324 AA_permease [H]
EC number: NA
Molecular weight: Translated: 56635; Mature: 56635
Theoretical pI: Translated: 8.50; Mature: 8.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTGLGSIIGSGWLFGAWKAAKIAGPAAICAWVIGAVVILAIALTYAELGAMFPESGGMV CCCCHHHHHHCCCHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE RYARYSHGALVGFISAWANWIAIVSVIPIEAEASIQYMSTWPYPWAHALFVDGSLTTHGL EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEECCCCHHHHH LLSAALVIIYFLLNYWGVKLFARANSAITIFKFLIPGATILGLMLTGFHKENFGEVSTFA HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCC PYGWSAVLTAVATSGIVFAFNGFQSPINLAGEARNPARSVPFAVIGSILLALVIYVLLQI CCCHHHHHHHHHHCCEEEEECCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH AYIGAVNPSDVMKGWSHFNFASPFAELAIALNLNWLAILLYVDAFVSPSGTGTTYMATTS HHHCCCCHHHHHHCHHCCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCEEEEEHH RMIYAMERNNTMPKMFGNVHPFYGVPRPAMWFNLLVSFIFLFFFRGWSSLAAVISVATVI HEEEEEECCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SYLTGPISLMSLRRAATDLERPLHIPGMKIIAPFAFVCASLILYWAKWPLTGEIILLMVV HHHHCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH ALPVYFYFQAKSGFAGWGRDLKAAWWLVAYLPVMAILSLIGSKQFGGHDLIPYGWDMLVV HHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH IAFSLVFYYWGVNSGYRSEYLDERQEHDEVLEGIGAH HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MLTGLGSIIGSGWLFGAWKAAKIAGPAAICAWVIGAVVILAIALTYAELGAMFPESGGMV CCCCHHHHHHCCCHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE RYARYSHGALVGFISAWANWIAIVSVIPIEAEASIQYMSTWPYPWAHALFVDGSLTTHGL EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEECCCCHHHHH LLSAALVIIYFLLNYWGVKLFARANSAITIFKFLIPGATILGLMLTGFHKENFGEVSTFA HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCC PYGWSAVLTAVATSGIVFAFNGFQSPINLAGEARNPARSVPFAVIGSILLALVIYVLLQI CCCHHHHHHHHHHCCEEEEECCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH AYIGAVNPSDVMKGWSHFNFASPFAELAIALNLNWLAILLYVDAFVSPSGTGTTYMATTS HHHCCCCHHHHHHCHHCCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCEEEEEHH RMIYAMERNNTMPKMFGNVHPFYGVPRPAMWFNLLVSFIFLFFFRGWSSLAAVISVATVI HEEEEEECCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SYLTGPISLMSLRRAATDLERPLHIPGMKIIAPFAFVCASLILYWAKWPLTGEIILLMVV HHHHCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH ALPVYFYFQAKSGFAGWGRDLKAAWWLVAYLPVMAILSLIGSKQFGGHDLIPYGWDMLVV HHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH IAFSLVFYYWGVNSGYRSEYLDERQEHDEVLEGIGAH HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377; 12730183 [H]