| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
Click here to switch to the map view.
The map label for this gene is tktA [H]
Identifier: 91785214
GI number: 91785214
Start: 4261140
End: 4263128
Strand: Reverse
Name: tktA [H]
Synonym: Bxe_A0565
Alternate gene names: 91785214
Gene position: 4263128-4261140 (Counterclockwise)
Preceding gene: 91785219
Following gene: 91785213
Centisome position: 87.08
GC content: 64.15
Gene sequence:
>1989_bases ATGGCCAACGCAATCCGCGCGCTGTCCATGGACGCCGTTCAAAAAGCGAACTCCGGCCACCCCGGCATGCCAATGGGCAT GGCCGAAATCGGCGTGGCGTTGTGGTCGCGTCATCTGCGCCACAACCCGAAGAACCCGCAATGGGCCGATCGCGACCGTT TCGTGCTGTCGAACGGTCACGGCTCGATGCTGCTGTACTCGCTGCTGCACCTGACCGGCTACGATCTGCCGATCGAAGAG CTGAAGAACTTCCGCCAGATGCATTCGAAGACGCCGGGCCACCCGGAATACGGCATCACGCCGGGCGTCGAGACGACCAC CGGCCCGCTCGGCCAGGGTCTGGCGAATGCGGTCGGCATGGCGCTCGCCGAGTCGCTGCTCGCCACCGAATTCAACAAGC CTGACGCAACGATCGTCGACCACCACACGTACGTGTTCGTCGGCGACGGCTGCCTGATGGAAGGCATCTCGCACGAAGCC TGTTCGCTCGCGGGCGTGCTGAAGCTGAACAAGCTGATTGCGTTCTACGACGACAACGGCATCTCGATCGACGGCGAAGT GGTGCACTGGTTCCACGACGACACGCCCAAGCGCTTCGAGGCGTACGGCTGGAACGTGATCCCGAACGTGGTCGGCCACG ACGTCGAAGCAGTGGACGCGGCCATCAAGCAGGCGAAGCAATCCGACAAACCCACGCTGATCTGCTGCAAGACGGTGATC GGCGAAGGCTCGCCGAACAAGGCCGGCAGCCACGATTCGCACGGCGCGGCGCTCGGCGACAAGGAAGTCGCGGCCACGCG CGAAAAGATCGGCTGGAAGTGGGAGCCGTTCGTGATCCCGCAAGAGGTCTATGCAGCTTGGGACGCAACAGAAGCGGGCG CACGCAACGAATCCGAGTGGGACAAGGCATTCGCCGCGTACGCTGCCAAATATCCGCAGGAAGCCGCTGAATTCAAGCGC CGCAACGCGAAGCAGTTGCCGGCGGACTGGAAGGAAAAGGCCAAGGCGATCATTGCCGGCGCGAACGAGCGCGCGGAAAC CGTAGCGACGCGCAAGGCATCGCAACAGGCTATCGAGGCTTTGTCGGCCGTGCTGCCGGAACTGCTCGGCGGCTCCGCCG ACCTGACCGGCTCGAACCTGACCAACTGGAAGGCCGCCAAACCGGTACGCGTGAACGCCGAAGGCAAGGCTGCCGGCAAC TACGTCAACTACGGCGTGCGTGAATTCGGCATGAGCGCCGCGATCAACGGCGTTGCGCTGCACGGTGGCTTCAAGGCGTT CGGCGGCACGTTCCTGACGTTCTCGGACTACAGCCGCAACGCGCTGCGCGTCGCCGCGCTGATGAAAGCGCCGTCGATCT TCGTGTTCACGCACGACTCGATCGGTCTGGGCGAAGACGGCCCGACCCACCAGTCGATCGAACATGTTGCGAGCCTGCGT CTGATTCCGCACCTGCAAGTGTGGCGTCCGGCTGATACCGTCGAGACGGCGGTGGCCTGGACCCACGCGGTCGAACATCA TGGCCCGTCGTGCCTGATCTTCAGCCGTCAGAACCTGCCGTTCTCGGAGCGCACGGACGCGCAGATCGCCAACATCGAGA AGGGCGGTTACGTGCTGCGCGACTGGAACGACGAGATCGTCGCGCGCAAGATCATCCTGATCGCCACCGGTTCGGAAGTC GAACTGGCGCTGAACGCGGTCGAGCCGCTGGCGCGCGAAGGTATCGCGGCGCGCGTCGTGTCCATGCCGTCAACCACCGT GTTCGACAAGCAGGACGCCGAGTACCGTGAACGCGTGCTGCCGCAAGGCGTGCGCCGCGTCGCGATCGAAGCGGGTGTGA CGGATTTCTGGCGCAAGTACGTGGGTCTGGAAGGCGGCGTGGTCGGCATCGACACGTTCGGCGAATCGGCCCCGGCTGGC GTGCTGTTCAAGCATTTCGGCTTCACCGTCGAACACGTGGTAGAGACGGCAAAAGCCGCACTCGGCTGA
Upstream 100 bases:
>100_bases TGAGCTGGCATTCGAGCATCCGGGCCTCAAGCGCACACCGCTTTCTGACTCTGTCTCCGGACTCGACATGACGACCCCGT CTCCCGCACCCACTTCCTTG
Downstream 100 bases:
>100_bases TCCTGGACAAGCGTTGCCGTTCGCGTGCGAACGCGCGGCAACGCGGTCAGTCAGACGAACCTGGACGTATTTTTTTAGCC ATCAGGAGATAGACCATGAC
Product: transketolase
Products: NA
Alternate protein names: TK 1 [H]
Number of amino acids: Translated: 662; Mature: 661
Protein sequence:
>662_residues MANAIRALSMDAVQKANSGHPGMPMGMAEIGVALWSRHLRHNPKNPQWADRDRFVLSNGHGSMLLYSLLHLTGYDLPIEE LKNFRQMHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALAESLLATEFNKPDATIVDHHTYVFVGDGCLMEGISHEA CSLAGVLKLNKLIAFYDDNGISIDGEVVHWFHDDTPKRFEAYGWNVIPNVVGHDVEAVDAAIKQAKQSDKPTLICCKTVI GEGSPNKAGSHDSHGAALGDKEVAATREKIGWKWEPFVIPQEVYAAWDATEAGARNESEWDKAFAAYAAKYPQEAAEFKR RNAKQLPADWKEKAKAIIAGANERAETVATRKASQQAIEALSAVLPELLGGSADLTGSNLTNWKAAKPVRVNAEGKAAGN YVNYGVREFGMSAAINGVALHGGFKAFGGTFLTFSDYSRNALRVAALMKAPSIFVFTHDSIGLGEDGPTHQSIEHVASLR LIPHLQVWRPADTVETAVAWTHAVEHHGPSCLIFSRQNLPFSERTDAQIANIEKGGYVLRDWNDEIVARKIILIATGSEV ELALNAVEPLAREGIAARVVSMPSTTVFDKQDAEYRERVLPQGVRRVAIEAGVTDFWRKYVGLEGGVVGIDTFGESAPAG VLFKHFGFTVEHVVETAKAALG
Sequences:
>Translated_662_residues MANAIRALSMDAVQKANSGHPGMPMGMAEIGVALWSRHLRHNPKNPQWADRDRFVLSNGHGSMLLYSLLHLTGYDLPIEE LKNFRQMHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALAESLLATEFNKPDATIVDHHTYVFVGDGCLMEGISHEA CSLAGVLKLNKLIAFYDDNGISIDGEVVHWFHDDTPKRFEAYGWNVIPNVVGHDVEAVDAAIKQAKQSDKPTLICCKTVI GEGSPNKAGSHDSHGAALGDKEVAATREKIGWKWEPFVIPQEVYAAWDATEAGARNESEWDKAFAAYAAKYPQEAAEFKR RNAKQLPADWKEKAKAIIAGANERAETVATRKASQQAIEALSAVLPELLGGSADLTGSNLTNWKAAKPVRVNAEGKAAGN YVNYGVREFGMSAAINGVALHGGFKAFGGTFLTFSDYSRNALRVAALMKAPSIFVFTHDSIGLGEDGPTHQSIEHVASLR LIPHLQVWRPADTVETAVAWTHAVEHHGPSCLIFSRQNLPFSERTDAQIANIEKGGYVLRDWNDEIVARKIILIATGSEV ELALNAVEPLAREGIAARVVSMPSTTVFDKQDAEYRERVLPQGVRRVAIEAGVTDFWRKYVGLEGGVVGIDTFGESAPAG VLFKHFGFTVEHVVETAKAALG >Mature_661_residues ANAIRALSMDAVQKANSGHPGMPMGMAEIGVALWSRHLRHNPKNPQWADRDRFVLSNGHGSMLLYSLLHLTGYDLPIEEL KNFRQMHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALAESLLATEFNKPDATIVDHHTYVFVGDGCLMEGISHEAC SLAGVLKLNKLIAFYDDNGISIDGEVVHWFHDDTPKRFEAYGWNVIPNVVGHDVEAVDAAIKQAKQSDKPTLICCKTVIG EGSPNKAGSHDSHGAALGDKEVAATREKIGWKWEPFVIPQEVYAAWDATEAGARNESEWDKAFAAYAAKYPQEAAEFKRR NAKQLPADWKEKAKAIIAGANERAETVATRKASQQAIEALSAVLPELLGGSADLTGSNLTNWKAAKPVRVNAEGKAAGNY VNYGVREFGMSAAINGVALHGGFKAFGGTFLTFSDYSRNALRVAALMKAPSIFVFTHDSIGLGEDGPTHQSIEHVASLRL IPHLQVWRPADTVETAVAWTHAVEHHGPSCLIFSRQNLPFSERTDAQIANIEKGGYVLRDWNDEIVARKIILIATGSEVE LALNAVEPLAREGIAARVVSMPSTTVFDKQDAEYRERVLPQGVRRVAIEAGVTDFWRKYVGLEGGVVGIDTFGESAPAGV LFKHFGFTVEHVVETAKAALG
Specific function: Unknown
COG id: COG0021
COG function: function code G; Transketolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transketolase family [H]
Homologues:
Organism=Homo sapiens, GI205277463, Length=606, Percent_Identity=27.8877887788779, Blast_Score=169, Evalue=9e-42, Organism=Homo sapiens, GI4507521, Length=606, Percent_Identity=27.8877887788779, Blast_Score=169, Evalue=9e-42, Organism=Homo sapiens, GI133778974, Length=583, Percent_Identity=27.1012006861063, Blast_Score=141, Evalue=3e-33, Organism=Escherichia coli, GI48994911, Length=664, Percent_Identity=65.0602409638554, Blast_Score=898, Evalue=0.0, Organism=Escherichia coli, GI1788808, Length=665, Percent_Identity=62.5563909774436, Blast_Score=839, Evalue=0.0, Organism=Caenorhabditis elegans, GI17539652, Length=672, Percent_Identity=25.5952380952381, Blast_Score=155, Evalue=8e-38, Organism=Saccharomyces cerevisiae, GI6325331, Length=668, Percent_Identity=50.748502994012, Blast_Score=614, Evalue=1e-176, Organism=Saccharomyces cerevisiae, GI6319593, Length=671, Percent_Identity=45.9016393442623, Blast_Score=556, Evalue=1e-159, Organism=Drosophila melanogaster, GI45551847, Length=686, Percent_Identity=27.2594752186589, Blast_Score=176, Evalue=5e-44, Organism=Drosophila melanogaster, GI45550715, Length=686, Percent_Identity=27.2594752186589, Blast_Score=176, Evalue=5e-44, Organism=Drosophila melanogaster, GI24666278, Length=680, Percent_Identity=26.1764705882353, Blast_Score=159, Evalue=4e-39, Organism=Drosophila melanogaster, GI24645119, Length=653, Percent_Identity=26.7993874425727, Blast_Score=155, Evalue=7e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005475 - InterPro: IPR005478 - InterPro: IPR020826 - InterPro: IPR005476 - InterPro: IPR005474 [H]
Pfam domain/function: PF02779 Transket_pyr; PF02780 Transketolase_C; PF00456 Transketolase_N [H]
EC number: =2.2.1.1 [H]
Molecular weight: Translated: 71705; Mature: 71574
Theoretical pI: Translated: 6.41; Mature: 6.41
Prosite motif: PS00801 TRANSKETOLASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANAIRALSMDAVQKANSGHPGMPMGMAEIGVALWSRHLRHNPKNPQWADRDRFVLSNGH CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCC GSMLLYSLLHLTGYDLPIEELKNFRQMHSKTPGHPEYGITPGVETTTGPLGQGLANAVGM CHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH ALAESLLATEFNKPDATIVDHHTYVFVGDGCLMEGISHEACSLAGVLKLNKLIAFYDDNG HHHHHHHHHCCCCCCCEEEECCEEEEECCCHHHHCCCHHHHHHHHHHHHCCEEEEECCCC ISIDGEVVHWFHDDTPKRFEAYGWNVIPNVVGHDVEAVDAAIKQAKQSDKPTLICCKTVI EEECCCEEEEECCCCCHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEEHHH GEGSPNKAGSHDSHGAALGDKEVAATREKIGWKWEPFVIPQEVYAAWDATEAGARNESEW CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEECHHHHHHHHCCHHCCCCCCHHH DKAFAAYAAKYPQEAAEFKRRNAKQLPADWKEKAKAIIAGANERAETVATRKASQQAIEA HHHHHHHHHHCHHHHHHHHHCCHHCCCCCHHHHHHEEEECCCHHHHHHHHHHHHHHHHHH LSAVLPELLGGSADLTGSNLTNWKAAKPVRVNAEGKAAGNYVNYGVREFGMSAAINGVAL HHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHCCHHHHCHHHHCCCEEE HGGFKAFGGTFLTFSDYSRNALRVAALMKAPSIFVFTHDSIGLGEDGPTHQSIEHVASLR ECCHHHHCCEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHH LIPHLQVWRPADTVETAVAWTHAVEHHGPSCLIFSRQNLPFSERTDAQIANIEKGGYVLR HCCCCEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHEEECCCCEEEE DWNDEIVARKIILIATGSEVELALNAVEPLAREGIAARVVSMPSTTVFDKQDAEYRERVL CCCCCEEEEEEEEEEECCCCEEHHHHHHHHHHCCHHEEEEECCCCEEECCCCHHHHHHHH PQGVRRVAIEAGVTDFWRKYVGLEGGVVGIDTFGESAPAGVLFKHFGFTVEHVVETAKAA HHHHHHHHHHHCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCHHHHHHHHHHHH LG CC >Mature Secondary Structure ANAIRALSMDAVQKANSGHPGMPMGMAEIGVALWSRHLRHNPKNPQWADRDRFVLSNGH CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCC GSMLLYSLLHLTGYDLPIEELKNFRQMHSKTPGHPEYGITPGVETTTGPLGQGLANAVGM CHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH ALAESLLATEFNKPDATIVDHHTYVFVGDGCLMEGISHEACSLAGVLKLNKLIAFYDDNG HHHHHHHHHCCCCCCCEEEECCEEEEECCCHHHHCCCHHHHHHHHHHHHCCEEEEECCCC ISIDGEVVHWFHDDTPKRFEAYGWNVIPNVVGHDVEAVDAAIKQAKQSDKPTLICCKTVI EEECCCEEEEECCCCCHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEEHHH GEGSPNKAGSHDSHGAALGDKEVAATREKIGWKWEPFVIPQEVYAAWDATEAGARNESEW CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEECHHHHHHHHCCHHCCCCCCHHH DKAFAAYAAKYPQEAAEFKRRNAKQLPADWKEKAKAIIAGANERAETVATRKASQQAIEA HHHHHHHHHHCHHHHHHHHHCCHHCCCCCHHHHHHEEEECCCHHHHHHHHHHHHHHHHHH LSAVLPELLGGSADLTGSNLTNWKAAKPVRVNAEGKAAGNYVNYGVREFGMSAAINGVAL HHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHCCHHHHCHHHHCCCEEE HGGFKAFGGTFLTFSDYSRNALRVAALMKAPSIFVFTHDSIGLGEDGPTHQSIEHVASLR ECCHHHHCCEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHH LIPHLQVWRPADTVETAVAWTHAVEHHGPSCLIFSRQNLPFSERTDAQIANIEKGGYVLR HCCCCEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHEEECCCCEEEE DWNDEIVARKIILIATGSEVELALNAVEPLAREGIAARVVSMPSTTVFDKQDAEYRERVL CCCCCEEEEEEEEEEECCCCEEHHHHHHHHHHCCHHEEEEECCCCEEECCCCHHHHHHHH PQGVRRVAIEAGVTDFWRKYVGLEGGVVGIDTFGESAPAGVLFKHFGFTVEHVVETAKAA HHHHHHHHHHHCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCHHHHHHHHHHHH LG CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8241274; 9278503; 2153656 [H]