| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is cbbGC [H]
Identifier: 91785213
GI number: 91785213
Start: 4260034
End: 4261044
Strand: Reverse
Name: cbbGC [H]
Synonym: Bxe_A0566
Alternate gene names: 91785213
Gene position: 4261044-4260034 (Counterclockwise)
Preceding gene: 91785214
Following gene: 91785211
Centisome position: 87.03
GC content: 62.12
Gene sequence:
>1011_bases ATGACGATTCGCGTCGCAATCAACGGCTACGGCCGTATTGGCCGCAACACGCTGCGCGCCTTCTATGAAAACGGCAAGAA GCACGATATCGAAATCGTCGCCATCAACGACCTCGGCGATGCCAGGACCAACGCTCACCTGACGCAATACGACACGGCGC ACGGCAAGTTCCCGGGCGAAGTGTCGGTGGACGGCGACTACCTGGTCGTCAACGGCGACAAGATCCGCGTGCTGGCCAAC CGCAACCCGGCTGAACTGCCGTGGGGCGAGCTGAACGTGGACGTCGTGATGGAATGCACGGGCTTTTTCACGACCAAGGA AAAGGCCAGCGCGCACATCAAGGGCGGCGCAAAGAAGGTGATCATCTCGGCGCCGGGCGGTAAAGACGTCGACGCCACGA TCGTCTACGGCGTGAACCACCATGTGCTGAAGGCATCGGACACGGTCATCTCGAACGCATCGTGCACGACGAACTGCCTC GCGCCGCTCGTCAAGCCGCTGAACGACAAGATCGGTCTGGTGAACGGTCTGATGACCACGATCCACGCGTACACGAACGA CCAGGTTCTGACGGACGTGTACCACGAAGACCTGCGCCGCGCGCGCTCGGCCACGCACAGCCAGATCCCGACCAAGACCG GCGCGGCTTCGGCGGTCGGCCTGGTGCTGCCGGAACTGAACGGCAAGCTGGACGGCTACGCGATTCGCGTGCCGACGATC AACGTGTCGATCGTCGATCTGTCCTTCATCGCCGCGCGCGACACGACGGTCGAAGAAGTCAACGCGATCATGAAGGAAGC GTCGGAAGGCTCGCTGAAGGGCATTCTCGGCTACAACCAGGCACCGCTGGTGTCGATCGACTTCAACCACAACCCGGCTT CGTCGACGTTCGACGCCACGCTGACCAAGGTGTCGGGCCGTCTGGTGAAGGTGTCGAGCTGGTACGACAACGAGTGGGGC TTCTCGAACCGCATGCTGGACACGGCTGTGGCGCTCGCTCACGCGAAGTAA
Upstream 100 bases:
>100_bases GCTGATCCTGGACAAGCGTTGCCGTTCGCGTGCGAACGCGCGGCAACGCGGTCAGTCAGACGAACCTGGACGTATTTTTT TAGCCATCAGGAGATAGACC
Downstream 100 bases:
>100_bases ATCACGGCGCTTCGTGCGCTATGCCCGCCAAAGCCGGCTTTGAGCCGGCGGCGGCACAGGGCAAGCAAAGCCGCTCTACG GAGTGGCTTTTTTTACGCCT
Product: glyceraldehyde-3-phosphate dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 336; Mature: 335
Protein sequence:
>336_residues MTIRVAINGYGRIGRNTLRAFYENGKKHDIEIVAINDLGDARTNAHLTQYDTAHGKFPGEVSVDGDYLVVNGDKIRVLAN RNPAELPWGELNVDVVMECTGFFTTKEKASAHIKGGAKKVIISAPGGKDVDATIVYGVNHHVLKASDTVISNASCTTNCL APLVKPLNDKIGLVNGLMTTIHAYTNDQVLTDVYHEDLRRARSATHSQIPTKTGAASAVGLVLPELNGKLDGYAIRVPTI NVSIVDLSFIAARDTTVEEVNAIMKEASEGSLKGILGYNQAPLVSIDFNHNPASSTFDATLTKVSGRLVKVSSWYDNEWG FSNRMLDTAVALAHAK
Sequences:
>Translated_336_residues MTIRVAINGYGRIGRNTLRAFYENGKKHDIEIVAINDLGDARTNAHLTQYDTAHGKFPGEVSVDGDYLVVNGDKIRVLAN RNPAELPWGELNVDVVMECTGFFTTKEKASAHIKGGAKKVIISAPGGKDVDATIVYGVNHHVLKASDTVISNASCTTNCL APLVKPLNDKIGLVNGLMTTIHAYTNDQVLTDVYHEDLRRARSATHSQIPTKTGAASAVGLVLPELNGKLDGYAIRVPTI NVSIVDLSFIAARDTTVEEVNAIMKEASEGSLKGILGYNQAPLVSIDFNHNPASSTFDATLTKVSGRLVKVSSWYDNEWG FSNRMLDTAVALAHAK >Mature_335_residues TIRVAINGYGRIGRNTLRAFYENGKKHDIEIVAINDLGDARTNAHLTQYDTAHGKFPGEVSVDGDYLVVNGDKIRVLANR NPAELPWGELNVDVVMECTGFFTTKEKASAHIKGGAKKVIISAPGGKDVDATIVYGVNHHVLKASDTVISNASCTTNCLA PLVKPLNDKIGLVNGLMTTIHAYTNDQVLTDVYHEDLRRARSATHSQIPTKTGAASAVGLVLPELNGKLDGYAIRVPTIN VSIVDLSFIAARDTTVEEVNAIMKEASEGSLKGILGYNQAPLVSIDFNHNPASSTFDATLTKVSGRLVKVSSWYDNEWGF SNRMLDTAVALAHAK
Specific function: Could Play A Role In Pyridoxal 5'-Phosphate Synthesis. [C]
COG id: COG0057
COG function: function code G; Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glyceraldehyde-3-phosphate dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI7669492, Length=335, Percent_Identity=49.2537313432836, Blast_Score=303, Evalue=2e-82, Organism=Homo sapiens, GI7657116, Length=330, Percent_Identity=42.1212121212121, Blast_Score=243, Evalue=2e-64, Organism=Escherichia coli, GI1789295, Length=334, Percent_Identity=51.1976047904192, Blast_Score=369, Evalue=1e-103, Organism=Escherichia coli, GI1788079, Length=329, Percent_Identity=52.2796352583587, Blast_Score=321, Evalue=4e-89, Organism=Caenorhabditis elegans, GI17534677, Length=333, Percent_Identity=49.8498498498498, Blast_Score=300, Evalue=5e-82, Organism=Caenorhabditis elegans, GI17534679, Length=333, Percent_Identity=49.8498498498498, Blast_Score=300, Evalue=9e-82, Organism=Caenorhabditis elegans, GI32566163, Length=333, Percent_Identity=49.5495495495495, Blast_Score=289, Evalue=1e-78, Organism=Caenorhabditis elegans, GI17568413, Length=333, Percent_Identity=49.5495495495495, Blast_Score=289, Evalue=1e-78, Organism=Saccharomyces cerevisiae, GI6322468, Length=336, Percent_Identity=45.8333333333333, Blast_Score=297, Evalue=2e-81, Organism=Saccharomyces cerevisiae, GI6321631, Length=338, Percent_Identity=46.4497041420118, Blast_Score=295, Evalue=1e-80, Organism=Saccharomyces cerevisiae, GI6322409, Length=336, Percent_Identity=45.5357142857143, Blast_Score=292, Evalue=7e-80, Organism=Drosophila melanogaster, GI85725000, Length=328, Percent_Identity=49.390243902439, Blast_Score=291, Evalue=5e-79, Organism=Drosophila melanogaster, GI22023983, Length=328, Percent_Identity=49.390243902439, Blast_Score=291, Evalue=5e-79, Organism=Drosophila melanogaster, GI17933600, Length=328, Percent_Identity=48.780487804878, Blast_Score=289, Evalue=2e-78, Organism=Drosophila melanogaster, GI18110149, Length=328, Percent_Identity=48.780487804878, Blast_Score=289, Evalue=2e-78, Organism=Drosophila melanogaster, GI19922412, Length=327, Percent_Identity=45.8715596330275, Blast_Score=270, Evalue=1e-72,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020831 - InterPro: IPR020830 - InterPro: IPR020829 - InterPro: IPR020828 - InterPro: IPR006424 - InterPro: IPR016040 [H]
Pfam domain/function: PF02800 Gp_dh_C; PF00044 Gp_dh_N [H]
EC number: =1.2.1.12 [H]
Molecular weight: Translated: 36199; Mature: 36068
Theoretical pI: Translated: 7.12; Mature: 7.12
Prosite motif: PS00071 GAPDH
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIRVAINGYGRIGRNTLRAFYENGKKHDIEIVAINDLGDARTNAHLTQYDTAHGKFPGE CEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCE VSVDGDYLVVNGDKIRVLANRNPAELPWGELNVDVVMECTGFFTTKEKASAHIKGGAKKV EEECCCEEEEECCEEEEEECCCCCCCCCCCCCEEEEEEECCCEEECCCCCEEECCCCEEE IISAPGGKDVDATIVYGVNHHVLKASDTVISNASCTTNCLAPLVKPLNDKIGLVNGLMTT EEECCCCCCCCEEEEEECCCEEEECCCCEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHH IHAYTNDQVLTDVYHEDLRRARSATHSQIPTKTGAASAVGLVLPELNGKLDGYAIRVPTI HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEE NVSIVDLSFIAARDTTVEEVNAIMKEASEGSLKGILGYNQAPLVSIDFNHNPASSTFDAT EEEEEEEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCCEEEEECCCCCCCCCHHHH LTKVSGRLVKVSSWYDNEWGFSNRMLDTAVALAHAK HEECCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCC >Mature Secondary Structure TIRVAINGYGRIGRNTLRAFYENGKKHDIEIVAINDLGDARTNAHLTQYDTAHGKFPGE EEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCE VSVDGDYLVVNGDKIRVLANRNPAELPWGELNVDVVMECTGFFTTKEKASAHIKGGAKKV EEECCCEEEEECCEEEEEECCCCCCCCCCCCCEEEEEEECCCEEECCCCCEEECCCCEEE IISAPGGKDVDATIVYGVNHHVLKASDTVISNASCTTNCLAPLVKPLNDKIGLVNGLMTT EEECCCCCCCCEEEEEECCCEEEECCCCEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHH IHAYTNDQVLTDVYHEDLRRARSATHSQIPTKTGAASAVGLVLPELNGKLDGYAIRVPTI HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEE NVSIVDLSFIAARDTTVEEVNAIMKEASEGSLKGILGYNQAPLVSIDFNHNPASSTFDAT EEEEEEEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCCEEEEECCCCCCCCCHHHH LTKVSGRLVKVSSWYDNEWGFSNRMLDTAVALAHAK HEECCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7763137 [H]