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The map label for this gene is cmpR [H]

Identifier: 91785120

GI number: 91785120

Start: 4154616

End: 4155515

Strand: Reverse

Name: cmpR [H]

Synonym: Bxe_A0660

Alternate gene names: 91785120

Gene position: 4155515-4154616 (Counterclockwise)

Preceding gene: 91785121

Following gene: 91785119

Centisome position: 84.88

GC content: 64.11

Gene sequence:

>900_bases
ATGCTCGCTCCGCTTCTGGTCGCCTTTTACGAAACTGTCCGGCAGGGCAGTGTGACCGCCGCCGCGAAGCGTCTCGAAGT
CAGTCAGCCGACCATCACGGCGCGTATCCAGCAACTCGAAAAGCAGTATGGCGTCGAGCTGTTCCACCGGCGCGGCAGCC
GCTTCGATCTGACCGACGCGGGCGCCGCGTTGATGCCGCTGATCGACCGGATGCAGCAGATCGAGAGCGACATCGACTTC
ACGCTGCGCAACGAGCGTGAGCTGGCAGCCGGCAATCTGCGGGTCGGCGCGACCGGGCCTTACTACATTCTGCCGGCCAT
CGCGGCGTTTCATCGCCACTATCCCGCCGTGAAGATTTGCGTCGAAATCGGTAACTCGCAGCAGATTCTCGATGCGCTGC
TCGACTTCCGCGTCGATCTGGCCGTGTCGTCGCAGCGCGTTGACGACCCGCGTTTCGCACGCCGCACGATTGCCGACGAC
CCGCTTGTCGTCGTCGCGCATTGCAGGCATCCGCTCGCCGCGCAGAAAACGGTCAGGCTCGCCGATGTCGCCGCGCATAC
GCTGCTGTTGCGCGAAGCCGGTTCGCGCACCCGCGAGGCGACCGAGATGGCGCTCAAGCGGATCGGCGTGCAGCCGGCCG
TGCTGATCGAGATCGGCAGCCGTGAAGCAATCTACGAAGCGATCCGCCACAACATGGGCTGTACGCTGATGCCGCTCGGC
GAAGCGCCGGCGCATCCCGATCTGCGGCAGGTTCCTCTCGAAACCGATGCACCGATCCTGCAGGAGTACCTGTATTACCT
GCAGGCGCGAGCCGGTTCGCGTCTGATCACCTCGTTCATGGCCGACGTCGACGGTTGCACCCGGCAGCCCACAAAAAAAG
CTGATGCCGTTATCGGCTAG

Upstream 100 bases:

>100_bases
GGTGCGAGCCGGCCGGCGGCCCGGCTTACGGAAATAAAATCGCCCGTAACGAAATTGCCTTGTCGCGGTAATAAATTGAA
AGTTTTCCTTCGACCCTTCC

Downstream 100 bases:

>100_bases
CTTGCGCAGAACGACATACCCTCGTCGTCCACGGTCCCTATCGTTGCATCGACTCGCCGGATGGTCCGGCGCACATCGGC
ATCGAAGAGAGGACCAACAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MLAPLLVAFYETVRQGSVTAAAKRLEVSQPTITARIQQLEKQYGVELFHRRGSRFDLTDAGAALMPLIDRMQQIESDIDF
TLRNERELAAGNLRVGATGPYYILPAIAAFHRHYPAVKICVEIGNSQQILDALLDFRVDLAVSSQRVDDPRFARRTIADD
PLVVVAHCRHPLAAQKTVRLADVAAHTLLLREAGSRTREATEMALKRIGVQPAVLIEIGSREAIYEAIRHNMGCTLMPLG
EAPAHPDLRQVPLETDAPILQEYLYYLQARAGSRLITSFMADVDGCTRQPTKKADAVIG

Sequences:

>Translated_299_residues
MLAPLLVAFYETVRQGSVTAAAKRLEVSQPTITARIQQLEKQYGVELFHRRGSRFDLTDAGAALMPLIDRMQQIESDIDF
TLRNERELAAGNLRVGATGPYYILPAIAAFHRHYPAVKICVEIGNSQQILDALLDFRVDLAVSSQRVDDPRFARRTIADD
PLVVVAHCRHPLAAQKTVRLADVAAHTLLLREAGSRTREATEMALKRIGVQPAVLIEIGSREAIYEAIRHNMGCTLMPLG
EAPAHPDLRQVPLETDAPILQEYLYYLQARAGSRLITSFMADVDGCTRQPTKKADAVIG
>Mature_299_residues
MLAPLLVAFYETVRQGSVTAAAKRLEVSQPTITARIQQLEKQYGVELFHRRGSRFDLTDAGAALMPLIDRMQQIESDIDF
TLRNERELAAGNLRVGATGPYYILPAIAAFHRHYPAVKICVEIGNSQQILDALLDFRVDLAVSSQRVDDPRFARRTIADD
PLVVVAHCRHPLAAQKTVRLADVAAHTLLLREAGSRTREATEMALKRIGVQPAVLIEIGSREAIYEAIRHNMGCTLMPLG
EAPAHPDLRQVPLETDAPILQEYLYYLQARAGSRLITSFMADVDGCTRQPTKKADAVIG

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions. Specifically binds to the cmpR- cmpA intergenic region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=235, Percent_Identity=34.468085106383, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI157672245, Length=276, Percent_Identity=31.1594202898551, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI87082132, Length=244, Percent_Identity=27.4590163934426, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI145693105, Length=204, Percent_Identity=26.4705882352941, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790399, Length=224, Percent_Identity=25, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787601, Length=181, Percent_Identity=27.0718232044199, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787879, Length=255, Percent_Identity=25.0980392156863, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788748, Length=243, Percent_Identity=24.6913580246914, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1787806, Length=297, Percent_Identity=23.9057239057239, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787530, Length=251, Percent_Identity=25.0996015936255, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33089; Mature: 33089

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAPLLVAFYETVRQGSVTAAAKRLEVSQPTITARIQQLEKQYGVELFHRRGSRFDLTDA
CCHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
GAALMPLIDRMQQIESDIDFTLRNERELAAGNLRVGATGPYYILPAIAAFHRHYPAVKIC
CHHHHHHHHHHHHHHHCCCEEECCCCHHHCCCEEECCCCCHHHHHHHHHHHHCCCCEEEE
VEIGNSQQILDALLDFRVDLAVSSQRVDDPRFARRTIADDPLVVVAHCRHPLAAQKTVRL
EECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH
ADVAAHTLLLREAGSRTREATEMALKRIGVQPAVLIEIGSREAIYEAIRHNMGCTLMPLG
HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECC
EAPAHPDLRQVPLETDAPILQEYLYYLQARAGSRLITSFMADVDGCTRQPTKKADAVIG
CCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLAPLLVAFYETVRQGSVTAAAKRLEVSQPTITARIQQLEKQYGVELFHRRGSRFDLTDA
CCHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
GAALMPLIDRMQQIESDIDFTLRNERELAAGNLRVGATGPYYILPAIAAFHRHYPAVKIC
CHHHHHHHHHHHHHHHCCCEEECCCCHHHCCCEEECCCCCHHHHHHHHHHHHCCCCEEEE
VEIGNSQQILDALLDFRVDLAVSSQRVDDPRFARRTIADDPLVVVAHCRHPLAAQKTVRL
EECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH
ADVAAHTLLLREAGSRTREATEMALKRIGVQPAVLIEIGSREAIYEAIRHNMGCTLMPLG
HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECC
EAPAHPDLRQVPLETDAPILQEYLYYLQARAGSRLITSFMADVDGCTRQPTKKADAVIG
CCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]